From 49cf9dac14a90fb0fa74fec34423426313be2842 Mon Sep 17 00:00:00 2001 From: Shaun Mahony Date: Fri, 27 May 2022 13:35:01 -0400 Subject: [PATCH] Minor edit to help message --- .../projects/sequnwinder/framework/SeqUnwinderConfig.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/org/seqcode/projects/sequnwinder/framework/SeqUnwinderConfig.java b/src/org/seqcode/projects/sequnwinder/framework/SeqUnwinderConfig.java index 567e297..b041648 100644 --- a/src/org/seqcode/projects/sequnwinder/framework/SeqUnwinderConfig.java +++ b/src/org/seqcode/projects/sequnwinder/framework/SeqUnwinderConfig.java @@ -336,7 +336,7 @@ public SeqUnwinderConfig(String[] arguments) throws IOException { } } - //Minimum number of sites to consitute a subclass + //Minimum number of sites to constitute a subclass minSubClassSize = Args.parseInteger(args, "minsubclass", 200); //Check if any subclasses have less the minimum number of allowed training instances @@ -585,7 +585,7 @@ public static String getSeqUnwinderArgsList(){ "\t--maxk : Maximum length of k-mer (default = 5)\n" + "\t--r : Regularization constant (default = 10)\n" + "\t--x : Number of folds for cross validation, default = 3.\n" + - "\t--minsubclass : minimum number of sites to make a subclass"+ + "\t--minsubclass : minimum number of sites to make a subclass\n"+ "\t--mergelow: Flag to merge subclasses with less than \"minsubclass\" sites with other relevant classes. By default, all subclasses with less that 200 sites are removed. \n" + " Other SeqUnwinder options (Highly recommend using defaul options): \n"+ "\t--minscanlen : Minimum length of the window to scan K-mer models. Default=8.\n"+