diff --git a/docs/course_schedule.md b/docs/course_schedule.md
index 06d2377..8fcd149 100644
--- a/docs/course_schedule.md
+++ b/docs/course_schedule.md
@@ -6,22 +6,22 @@
 
 | block   	| start    	| end      	| subject                        	|
 |---------	|----------	|----------	|--------------------------------	|
-| block 1 	|  9:00 AM 	| 10:30 AM 	| [Introduction](../day1/introduction)                   	|
+| block 1 	|  9:00 AM 	| 10:30 AM 	| [Introduction](day1/introduction.md)                   	|
 |         	| 10:30 AM 	| 11:00 AM 	| BREAK                          	|
-| block 2 	| 11:00 AM 	| 12:30 PM 	| [Setup](../day1/server_login) & [Reproducibility](../day1/reproducibility)	|
+| block 2 	| 11:00 AM 	| 12:30 PM 	| [Setup](day1/server_login.md) & [Reproducibility](day1/reproducibility.md)	|
 |         	| 12:30 PM 	|  1:30 PM 	| BREAK                          	|
-| block 3 	|  1:30 PM 	|  3:00 PM 	| [Read alignment - basics](../day1/alignment)      	|
+| block 3 	|  1:30 PM 	|  3:00 PM 	| [Read alignment - basics](day1/alignment.md)      	|
 |         	|  3:00 PM 	|  3:30 PM 	| BREAK                          	|
-| block 4 	|  3:30 PM 	|  5:00 PM 	| [Read alignment - advanced](../day1/alignment_advanced)    	|
+| block 4 	|  3:30 PM 	|  5:00 PM 	| [Read alignment - advanced](day1/alignment_advanced.md)    	|
 
 ## Day 2
 
 | block   	| start    	| end      	| subject                  	|
 |---------	|----------	|----------	|--------------------------	|
-| block 1 	| 9:00 AM  	| 10:30 AM 	| [Variant calling - preparation](../day2/variant_calling_preparation)          	|
+| block 1 	| 9:00 AM  	| 10:30 AM 	| [Variant calling - preparation](day2/variant_calling_preparation.md)          	|
 |         	| 10:30 AM 	| 11:00 AM 	| BREAK                    	|
-| block 2 	| 11:00 AM 	| 12:30 PM 	| [Variant calling](../day2/variant_calling)     	|
+| block 2 	| 11:00 AM 	| 12:30 PM 	| [Variant calling](day2/variant_calling.md)     	|
 |         	| 12:30 PM 	| 1:30 PM  	| BREAK                    	|
-| block 3 	| 1:30 PM  	| 3:00 PM  	| [Filtering & evaluation](../day2/filtering_evaluation) & [Visualisation](../day2/visualisation)	|
+| block 3 	| 1:30 PM  	| 3:00 PM  	| [Filtering & evaluation](day2/filtering_evaluation.md) & [Visualisation](day2/visualisation.md)	|
 |         	| 3:00 PM  	| 3:30 PM  	| BREAK                    	|
-| block 4 	| 3:30 PM  	| 5:00 PM  	| [Annotation](../day2/annotation)               	|
+| block 4 	| 3:30 PM  	| 5:00 PM  	| [Annotation](day2/annotation.md)               	|