From d0014cf2ceb1651a9ad7664bd9f6857c8ef5700e Mon Sep 17 00:00:00 2001 From: Geert van Geest Date: Thu, 29 Aug 2024 10:17:54 +0200 Subject: [PATCH] santizises link --- docs/day1/alignment_advanced.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/day1/alignment_advanced.md b/docs/day1/alignment_advanced.md index 518db22..9a0d83e 100644 --- a/docs/day1/alignment_advanced.md +++ b/docs/day1/alignment_advanced.md @@ -264,7 +264,7 @@ mother lib1 H0164.2.ALXX140820 H0164.2 son lib3 H0164.6.ALXX140820 H0164.6 ``` -**Exercise** Generate a script called `C02_add_readgroups.sh` (in `~/project/scripts/C-all_samples`) to loop over the tab-delimited file (have a look at the last exercise in [Setup](../server_login#loops)), and add the correct readgroups to the bam file of each sample with `gatk AddOrReplaceReadGroups`. +**Exercise** Generate a script called `C02_add_readgroups.sh` (in `~/project/scripts/C-all_samples`) to loop over the tab-delimited file (have a look at the last exercise in [Setup](server_login.md#loops)), and add the correct readgroups to the bam file of each sample with `gatk AddOrReplaceReadGroups`. ??? hint