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Master Thesis Analysis Scripts

This is a repository of all of the scripts implemented for my master thesis, excluding R-package implementations.

Structure

  • Metadata: Contains all of the metadata files of the downloaded Hi-C and RNA-seq data

  • DataAggregation: Contains all helper scripts used for downloading the data, applying fan-c etc.

  • InsulationScoreScripts: Contains all scripts used to decide on how to apply the Insulation Scores.

  • DirectionalityIndexScripts: Contains all scripts used to decide on how to apply the Directionality Indices.

  • Training: Contains all produced classifiers and the training scripts

  • AcrossCTComparisonMSIMI: Contains all scripts for the comparison when mixing MSI and MI values from a cell type to predict in another cell type.