From aaa729a719bfbab9e811285d27744580bc19a5e1 Mon Sep 17 00:00:00 2001 From: Christian Meesters Date: Sat, 13 Apr 2024 16:48:13 +0200 Subject: [PATCH] feat: introduced slides about actual deployment in 'Selecting_Workflow' slide set --- slides/users/Selecting_Workflows.tex | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/slides/users/Selecting_Workflows.tex b/slides/users/Selecting_Workflows.tex index bb1cc7c..5e7ab74 100644 --- a/slides/users/Selecting_Workflows.tex +++ b/slides/users/Selecting_Workflows.tex @@ -87,7 +87,29 @@ \subsection{The Snakemake Workflow Catalogue} \end{enumerate} \end{frame} +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +\begin{frame}[fragile] + \frametitle{Deployment II - Creating an Environment Fork} + Instead of creating environment from scratch we can clone one: + \begin{lstlisting}[language=Bash, style=Shell] +$ mamba create -n --clone snakemake + \end{lstlisting} + This should clone the \altverb{snakemake} environment with all necessary tools! + \pause + \begin{task} + Pick one workflow from the catalogue, create a new environment with a corresponding name, e.\,g. \altverb{rna-seq-star}. Activate it. Then, install \altverb{snakedeploy}. + \end{task} + \pause +\end{frame} +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +\begin{frame}[fragile] + \frametitle{Deployment III - Let's do it!} + Follow step 2 of a selected workflow usage instructions: + \begin{center} + \includegraphics[width=0.6\textwidth]{Snakemake/deploy_workflow} + \end{center} +\end{frame} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \begin{frame}[fragile]