Error in if (rtr[2] < rtim_range[1] | rtr[1] > rtim_range[2] | mzr[2] < : missing value where TRUE/FALSE needed

[YuanwenGuo]

Hi, I was trying to process ~400 samples with XCMS. It went well until fillChromPeaks step with error message:
Requesting 463 peaks from ### ... Error in if (rtr[2] < rtim_range[1] | rtr[1] > rtim_range[2] | mzr[2] < :
missing value where TRUE/FALSE needed
Calls: fillChromPeaks ... tryCatch -> tryCatchList -> tryCatchOne ->
Execution halted

This happens after I use sub-sample alignment.
Could you please help me with this issue? Thank you!

Best,
Yuanwen

[sneumann]

Are you sure the issue is in the correct repo then, sounds like it shoudl go into xcms. Yours, Steffen