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ValueError when running BlobDetector #2003
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I have not tried to figure out the exact source of the problem but it could be something breaking from an incompatible dependency. Try installing this: and then you should be able to run the blob detector as above. |
Thank you for your response. I'm quite sure, that you are correct, and the error is due to incompatible dependencies. However, I still don't get a working environment with an installation like this. What I tried: mamba create -n starfish-issue-test python=3.8
mamba activate starfish-issue-test
pip install starfish==0.2.2
pip install scikit-image==0.15.0 Running the example above now leads to the new error (truncated):
Installing an older version of
So far I have failed to collect a simple series of |
Description
When trying to run the BlobDetector example, I receive a "ValueError: Data must be 1-dimensional"
Steps/Code to Reproduce
To reproduce, install the latest version of starfish from GitHub (
0.2.2-39-g853f56c7
) and try to run the BlobDetector example. Code from that example copied here:Expected Results
No error is thrown.
Actual Results
The following error occurs:
Versions
Linux-5.19.0-35-generic-x86_64-with-debian-bookworm-sid
Python 3.7.12 | packaged by conda-forge | (default, Oct 26 2021, 06:08:21)
[GCC 9.4.0]
NumPy 1.21.2
SciPy 1.7.1
scikit-image 0.18.3
pandas 1.3.2
sklearn 0.24.2
xarray 0.19.0
sympy 1.5.1
starfish 0.2.2+39.g853f56c7
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