diff --git a/server/utils/edge.R b/server/utils/edge.R index 9763260ddb..a99cdfe9fd 100644 --- a/server/utils/edge.R +++ b/server/utils/edge.R @@ -30,13 +30,6 @@ filter_genes_by_global_variance <- function(read_counts, gene_id_symbols, num_va return(list(read_counts = read_counts, gene_id_symbols = gene_id_symbols)) } -# Will implement this later -filter_genes_by_group_variance <- function(read_counts, gene_id_symbols, num_variable_genes, cases, controls) { - # Divide the read counts into two groups - case_read_counts <- read_counts[, cases] - control_read_counts <- read_counts[, controls] -} - # Read JSON input from stdin read_json_time <- system.time({ con <- file("stdin", "r") @@ -206,3 +199,11 @@ multiple_testing_correction_time <- system.time({ # Output results toJSON(output) + +#-----------------------------------# +# Will implement this later +filter_genes_by_group_variance <- function(read_counts, gene_id_symbols, num_variable_genes, cases, controls) { + # Divide the read counts into two groups + case_read_counts <- read_counts[, cases] + control_read_counts <- read_counts[, controls] +}