Merge branch 'master' of github.com:superbit-collaboration/superbit-m…

…etacal

README.md

@@ -38,6 +38,31 @@ The example configuration file is shown in `configs/pipe_test.yaml`. An example
 
 The available config options for each submodule are defined in the various module classes in `superbit_lensing.pipe.py`, such as `GalSimModule`. The required & optional fields are given in `_req_fields` and `_opt_fields` respectively. The pipeline runner tells you if you fail to pass a required field or if you pass something that it doesn't understand.
 
+## To build a specific run environment
+Create env from yaml (e.g. `env_v1.3.9.yaml`):
+
+`conda env create --name sbmcal_139 --file env_v1.3.9.yaml`
+
+Activate new env:
+
+`conda activate sbmcal_139`
+
+cd to meds repo:
+
+`cd /path/to/repos/meds`
+
+Build it:
+
+`python setup.py install`
+
+cd to this repo:
+
+`cd /path/to/repos/superbit-metacal`
+
+pip install repo:
+
+`pip install -e /path/to/repos/superbit-metacal`
+
 ## For the experts
 
 If you want to add a new submodule to the pipeline, simply define a new subclass `MyCustomModule(SuperBITModule)` that implements the abstract `run()` function of the parent class and add it to `pipe.MODULE_TYPES` to register it with the rest of the pipeline. You should also implement the desired required & optional parameters that can be present in the module config with the class variables `_req_fields` and `_opt_fields`, which should be lists.

configs/gauss-uberseg-gs.yaml

@@ -0,0 +1,52 @@
+# SuperBIT parameters
+# -------------------
+pixel_scale:        0.141       # Pixel scale                               [arcsec/px]
+gain:               0.343       # Camera gain                               [e- / ADU]
+read_noise:         1.8         # Read noise                                [e-]
+dark_current:       0.0022      # mean dark current                         [ADU / px / s]
+dark_current_std:   0.001       # standard deviation dark current           [ADU /px / s]
+image_xsize:        9568        # Horizontal image size                     [px]
+image_ysize:        6380        # Vertical image size                       [px]
+exp_time:           600         # Exposure time per image                   [s]
+tel_diam:           0.5         # Telescope aperture diameter               [m]
+# Define strut parameters. BIT has four orthogonal struts that
+# are ~12mm wide, and the exit pupil diameter is 137.4549 mm (Zemax)
+nstruts:            4           # Number of M2 struts                       []
+strut_thick:        0.087       # Fraction of diameter strut thickness      [m/m]
+strut_theta:        90          # Angle between vertical and nearest        [deg]
+obscuration:        0.380       # Fraction of aperture obscured by M2       []
+
+
+# Simulated image parameters
+# --------------------------
+center_ra:          13.3        # Central Right Ascension                   [hrs]
+center_dec:         33.1        # Central Declination                       [deg]
+sky_bkg:            0.0519      # mean sky background from AG's paper       [ADU / s / px]
+sky_sigma:          0.06        # standard deviation of sky background      [ADU / s / px]
+nobj:               34300       # Number of galaxies (COSMOS 25.2 depth)    []
+nstars:                         # Number of stars in the field              []
+nexp:               18          # Number of exposures per PSF model         []
+nclustergal:        30          # Number of cluster galaxies (arbitrary)    []
+bandpass:     'crates_b'        # Catalog filter name for simulation        []
+jitter_fwhm:        0.24        # Kernel size of SuperBIT jitter            [arcsec]
+use_optics:         False       # Add optics model to PSF? (default: True)  [True/False]
+run_name:         'gauss_uberseg'   # Root for exposure name creation           []
+
+# Simulated cluster parameters
+# ----------------------------
+lam:                475         # Fiducial wavelength for abberations       [nm]
+nfw_conc:           4           # Concentration parameter = virial radius / NFW scale radius
+omega_m:            0.3         # Omega matter for the background cosmology []
+omega_lam:          0.7         # Omega lambda for the background cosmology []
+
+# Run parameters
+# --------------
+# Define some paths and filenames
+cosmosdir:         # Path to COSMOS data directory
+datadir:           # Path to repo/GalSim data directory
+cat_file_name:    'cosmos15_superbit2023_phot_shapes.csv' # catalog file name for COSMOS (in cosmosdir)
+cluster_cat_name: 'real_galaxy_catalog_23.5_example.fits' # path to cluster catalog
+outdir:            # directory where output images and truth catalogs are saved
+gaia_dir:          # Path to GAIA star catalog directory
+sample_gaia_cats: True
+

configs/gauss-uberseg-meta.yaml

@@ -0,0 +1,13 @@
+run_name: 'gauss_uberseg'
+base_dir: '/projects/superbit/repos/superbit-metacal/runs/gauss_uberseg/'
+nfw_dir: '/projects/superbit/repos/superbit-metacal/runs/nfw_truth/'
+gs_base_config: '/projects/superbit/repos/superbit-metacal/configs/gauss-uberseg-gs.yaml'
+mass_bins: [2.5e14, 4.1e14, 5.8e14, 7.8e14, 1.6e15] # Msol / h; must have decimal!
+z_bins: [0.075, 0.25, 0.45]
+realizations: 30
+ncores_per_job: 48
+memory_per_job: 64 
+vb: False
+run_diagnostics: True
+overwrite: True
+master_seed: 4681084119