How to get a list of all lab panels from the Module Builder

[shabiel]

Need to finagle the modules.js file to make it a valid JSON file first, then:

jq -r '[.. | select(.type? == "DiagnosticReport") | select(.observations[0].category == "laboratory") |  .codes[0]] | sort_by(.code) | unique | ( .[] | [.system, .code, .display] ) | @csv ' src/data/modules.js

Output

"LOINC","24321-2","Basic Metabolic 2000 Panel"
"LOINC","24321-2","Basic metabolic 2000 panel - Serum or Plasma"
"LOINC","24323-8","Comprehensive metabolic 2000 panel - Serum or Plasma"
"LOINC","24336-0","Gas panel - Arterial blood"
"LOINC","24339-4","Gas panel - Venous blood"
"LOINC","24356-8","Urinalysis complete panel - Urine"
"LOINC","24357-6","Urinalysis macro (dipstick) panel - Urine"
"LOINC","24360-0","Hemoglobin and Hematocrit panel - Blood"
"LOINC","34528-0","PT panel - Platelet poor plasma by Coagulation assay"
"LOINC","50190-8","Iron and Iron binding capacity panel - Serum or Plasma"
"LOINC","51990-0","Basic Metabolic Panel"
"LOINC","51990-0","Basic metabolic panel - Blood"
"LOINC","55405-5","Heart failure tracking panel"
"LOINC","57023-4","Auto Differential panel - Blood"
"LOINC","57698-3","Lipid panel with direct LDL - Serum or Plasma"
"LOINC","58410-2","CBC panel - Blood by Automated count"
"LOINC","58410-2","Complete blood count (hemogram) panel - Blood by Automated count"
"LOINC","600-7","Blood Culture, Routine"
"LOINC","69742-5","CBC W Differential panel, method unspecified - Blood"
"LOINC","75622-1","HIV 1 and 2 tests - Meaningful Use set"
"LOINC","75689-0","Iron panel - Serum or Plasma"
"LOINC","80381-7","Influenza virus A and B Ag panel - Upper respiratory specimen by Rapid immunoassay"
"LOINC","82335-1","Cytokines panel - Serum or Plasma"
"LOINC","89577-1","Troponin I.cardiac panel - Serum or Plasma by High sensitivity method"
"LOINC","92143-7","Respiratory pathogens DNA and RNA panel - Respiratory specimen by NAA with probe detection"
"LOINC","93124-6","New York Heart Association Functional Classification panel"
"LOINC","94531-1","SARS-CoV-2 RNA Pnl Resp NAA+probe"