New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Jump to bottom

Some questions about gene selection #249

Open

HelloWorldLTY opened this issue Oct 15, 2022 · 0 comments

HelloWorldLTY commented Oct 15, 2022

Hi, I used the ENSG gene type to run the gene ontology method, but I found that it cannot work, and I received this error:

**FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS

I can try to change the type of gene into SGD id, but I think in this project, they use ENSG and successfully run the go enrichment analysis.
https://github.com/chenhcs/GIANT/blob/main/example_data/DE_genes/atac_Thymus_c0.txt

Could you please help me solve this problem? Thanks.

# for free to join this conversation on GitHub. Already have an account? # to comment