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Implement W2V model #8

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tdrose opened this issue Oct 24, 2023 · 2 comments
Open

Implement W2V model #8

tdrose opened this issue Oct 24, 2023 · 2 comments
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@tdrose
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tdrose commented Oct 24, 2023

As an additional model for the package. Use previous work from Dominik for the dataloaders.

Try to incorporate intensities instead of just thresholds.

@tdrose tdrose self-assigned this Oct 24, 2023
@tdrose tdrose mentioned this issue Jan 3, 2024
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@tdrose
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tdrose commented Feb 6, 2024

  • Implement Patch Dataset dataloader (using RandomCrop, or sample only from tissue slice region (only pixels that have at least one non-zero ionimage))
  • Patched image parameter optimization
  • Make new evaluation metrics to better explore/understand model performance
  • Evaluate on Different Dataloader scenarios

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