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Error in fstat(b, fstonly = T) : could not find function "fstat" #358

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nicolashazzi23 opened this issue Dec 27, 2023 · 3 comments
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@nicolashazzi23
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Hi

I am trying to run an fst analysis and I got the following error: Error in fstat(b, fstonly = T) : could not find function "fstat".

I installed the package hierfstat and loaded it, but it still did not work. Do you have some idea of what could be happening?

@romunov
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romunov commented Jan 1, 2024

Have you restarted your R session after installing the package? What versions of packages are you using (sessionInfo())?

@jgx65
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jgx65 commented Jan 2, 2024

If you installed hierfstat, the simplest way to get Fst is via the command hierfstat::wc(dat) where dat is a genind object. This will give you the Weir and Cockerham (1984) estimate of FST. An alternative is using hierfstat::basic.stats(dat) which will provide more detailed information as well as Nei's estimator of FST

@nicolashazzi23
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Thanks I did it and now works perfectly, thank you very much!

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