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MD5
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53890f89306f928aeba661056effeb87 *DESCRIPTION
aeb3d3525f92d4b2ae0659a9d9cb593b *LICENSE
984c0212d9a335722f505fdd58ec8e47 *NAMESPACE
8dceb1e086ad63ec5372ebc103b0e176 *R/RcppExports.R
4d37f548893c52bcb32eaaa096e830ef *R/data.R
5d53b69b4abe1eff03d5ac9917a733a0 *R/findGroves.R
19e5b601fe7bef51c650444dce411532 *R/makeCollapsedTree.R
b5cb61e857fe552beb7d6f1a21deff0c *R/medTree.R
13beca34b681f40fb0497f415322a446 *R/metrics.R
76eb5cba87cc53f5570e3b60ea2cc020 *R/plotGroves.R
18afac6e7bacb5d92f64a7671c085aa3 *R/plotTreeDiff.R
c4959c0d99f5137112ffa72eda02d30e *R/relatedTreeDist.R
962bc87f2f8956c0fe8c82a609d7c317 *R/servers.R
63eeb945fc9146da9b22c50adf51bd23 *R/simulateIndTree.R
193c876449b20f5e09b3f19cfbebc629 *R/tipsMRCAdepths.R
ce608ce5748db20ebf21fca3a1a27d9b *R/transmissionTrees.R
1af97d1dc7a72ded012f39dd66fcefd3 *R/treeConcordance.R
7cc6a1c393ea681427d452909dd5c4f6 *R/treespace.R
7f84c016b3c15df54a00cc2bb3777e76 *README.md
1e736e69076e4bcfe5f64324597815bf *build/vignette.rds
b22dd6d8a0aa612718b4cbbd9d4ccf16 *data/DengueBEASTMCC.RData
bbf91b415237e7ab1114fcf7cc54ad6a *data/DengueSeqs.RData
bcb388cef1ad20dbc0fbb98ba3812581 *data/DengueTrees.RData
6e65cb60b2f3d343d8a65a515e7669ec *data/fluTrees.RData
c30fe0c101e1d52f45a2faee4fc7b2de *data/woodmiceTrees.RData
f04f4f963e9642774e6ae96bfa1b86d9 *inst/CITATION
550966e895ba738a7c405077cedb1cb1 *inst/doc/DengueVignette.R
90d735d54479cd4ba58862b09bf4dbe8 *inst/doc/DengueVignette.Rmd
534c13ec1454b230ab075794cff56223 *inst/doc/DengueVignette.html
60a7c7da1defd6aea6253d7003906b5a *inst/doc/TransmissionTreesVignette.R
8e285be54aeb47115b7fe4942c719814 *inst/doc/TransmissionTreesVignette.Rmd
08907f1ad1de2b08771c569b3ffeb511 *inst/doc/TransmissionTreesVignette.html
da6b4478bdd97dd4de3568c7ea60cb8a *inst/doc/introduction.R
6718d34eaf23969f559a02132fdcb5c3 *inst/doc/introduction.Rmd
08d202e19a44259f725b13b8ae172960 *inst/doc/introduction.html
4b916757092f2b6d7a5da3b7e2ca03e6 *inst/doc/tipCategories.R
a4af07adf372f69ddcf75cbdf780afe5 *inst/doc/tipCategories.Rmd
ba75c19365d6aef465ec9dad5624b250 *inst/doc/tipCategories.html
6d890be7cf87406d84b7c855acede2a3 *inst/shiny/server.R
244f3ef75e8f6a1a325d980df84d949e *inst/shiny/ui.R
6c4711607de1791415c5b50511e84ad3 *inst/shiny/www/bootstrap.simplex.css
dc516afa494d9430a94c9fb23fc6aa97 *inst/shiny/www/html/help.html
d8684ae68cfdcc9049f1ff417ce3c3eb *inst/shiny/www/img/line.png
c3d0c3d454439e0980a1a2af2b355ca8 *inst/shiny/www/img/logo.png
96abc4b41da8cafa6f565bf5604b460c *inst/shiny/www/styles.css
095129a1994251eec286d5bc3f3fce98 *man/DengueBEASTMCC.Rd
91697d211ad4230586806881efb444da *man/DengueSeqs.Rd
1fb6214a402808562b962f6ff0ab9db2 *man/DengueTrees.Rd
44b9c8391dda972b5298c0b98fd4dccd *man/findGroves.Rd
d31450f6795104b1824e3f36d3161d3f *man/findMRCIs.Rd
5368ab087178daccfda6080c2cc7a4f6 *man/fluTrees.Rd
cb81f4960674bf2be0843a85e03e820b *man/linearMrca.Rd
6197f441e80bf95789962d6ea87c9816 *man/makeCollapsedTree.Rd
6eb5452f9df5aa4fa165a2a53c60f16e *man/medTree.Rd
3c7119f193b39f8ebfd8ce259d61248d *man/multiDist.Rd
2b399278b9c70facffb2cd97efae23bd *man/plotGroves.Rd
88f5d0ed2e6e13777e930bcc69fca3ff *man/plotGrovesD3.Rd
eb070e59fe20f68bac465a29581d8ea5 *man/plotTreeDiff.Rd
f1ff6be3e9debb74626d75ac60aa2e33 *man/refTreeDist.Rd
e0b312d9a8b6c0269b2f51a59adbf5ee *man/relatedTreeDist.Rd
9ee323e8f69f1487da2be957998eedde *man/simulateIndTree.Rd
6548fe1bf09ef8ddd395dc54e16e2d4f *man/tipDiff.Rd
7325336bf6883e4a6cb6d8045e512fde *man/tipsMRCAdepths.Rd
4109e7caade80c691a4e9f43225a0833 *man/treeConcordance.Rd
716fc0346279155278746206a90a8c6b *man/treeDist.Rd
033c781e86085e130696b3df0b1c1e3d *man/treeVec.Rd
17ea94491157ebaff4784833aa4c5b47 *man/treespace.Rd
ec2bc877c94fef4eb173e9a61cd1eb09 *man/treespaceServer.Rd
a77475898bc5833024c09c0dc37869db *man/wiwMedTree.Rd
81d99a24989b6bd9bc217ca56b1e1bb1 *man/wiwTreeDist.Rd
ee53473c06ed9d4d1bba201c55995879 *man/woodmiceTrees.Rd
9c74c81eeaf5d8af22cd33dab4daffcc *src/CPP_update_combinations.cpp
c6831a805f5342deba06265ad41e1fc8 *src/RcppExports.cpp
4328a6f98f7e19fdb142fa67fac002ec *tests/testthat.R
4f499b1668c9b2c7a0008473d97532a5 *tests/testthat/testbasics.R
90d735d54479cd4ba58862b09bf4dbe8 *vignettes/DengueVignette.Rmd
8e285be54aeb47115b7fe4942c719814 *vignettes/TransmissionTreesVignette.Rmd
d7d0f02319a4fcc003bed10e738c9d5f *vignettes/construction.png
6718d34eaf23969f559a02132fdcb5c3 *vignettes/introduction.Rmd
a4af07adf372f69ddcf75cbdf780afe5 *vignettes/tipCategories.Rmd
dece84f823670ff0e7257cc643bf068b *vignettes/treespace3d.png
3957a3c2207cd065f1d95cc704ebaa7d *vignettes/treespaceDensiTree.png
32257dc64bf2670d28770a4679f063a7 *vignettes/treespaceTree.png
badb94ebf8cc44a29833b4eb658fdf44 *vignettes/vignettes/distances-1.png
a9ebb36ae31cc0fd528260758a3559ea *vignettes/vignettes/distances-2.png
bc804c608b84e309a976bf90fb9460ee *vignettes/vignettes/plotgroves-1.png
95c9438bdf54183e1b5c75cdc664b339 *vignettes/vignettes/woodmiceCluster1-1.png
28d7f5fb542b299c015f55c8286bec6b *vignettes/vignettes/woodmiceMedian-1.png
0d5fc8bb7e4e30e4f7de9a757ad0ab42 *vignettes/vignettes/woodmice_plotTreeDiff-1.png
5d34bb63b56d9884d561de8d11e33625 *vignettes/vignettes/woodmice_plotTreeDiff-2.png