NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("[",pathway_database)
S3method(arrange,enrich_result)
S3method(filter,enrich_result)
S3method(filter,pathway_database)
S3method(length,pathway_database)
S3method(names,pathway_database)
S3method(print,metpath_conflicts)
export(annotate_isotope)
export(annotate_metabolites_fpa)
export(arrange)
export(calculate_activity_score)
export(calculate_activity_socre)
export(calculate_centrality)
export(calculate_redundance)
export(compound_list)
export(database_info)
export(describtion)
export(enrich_bar_plot)
export(enrich_hmdb)
export(enrich_kegg)
export(enrich_metabolic_pathway)
export(enrich_network)
export(enrich_pathways)
export(enrich_scatter_plot)
export(filter)
export(filter_pathway)
export(gene_list)
export(generate_null_activity_score_distribution)
export(get_hidden_metabolites)
export(get_pathway_class)
export(group_peaks_rt)
export(identify_metabolic_modules)
export(metpath_conflicts)
export(metpath_logo)
export(metpath_packages)
export(pathway_class)
export(pathway_id)
export(pathway_name)
export(perform_fpa)
export(plot_metabolic_module_fpa)
export(plot_metabolic_network_fpa)
export(reference_list)
export(related_disease)
export(related_module)
export(remove_redundancy)
export(score_peak_group)
exportClasses(enrich_result)
exportClasses(pathway_database)
import(ggplot2)
import(ggraph)
import(igraph)
importClassesFrom(massdataset,tidymass_parameter)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(KEGGREST,keggGet)
importFrom(KEGGREST,keggList)
importFrom(Rdisop,getIsotope)
importFrom(Rdisop,getMolecule)
importFrom(crayon,blue)
importFrom(crayon,col_align)
importFrom(crayon,col_nchar)
importFrom(crayon,num_colors)
importFrom(crayon,red)
importFrom(crayon,yellow)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(furrr,future_map)
importFrom(future,multisession)
importFrom(future,plan)
importFrom(ggplot2,scale_color_manual)
importFrom(ggraph,geom_edge_arc)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggraph,scale_edge_color_manual)
importFrom(ggraph,theme_graph)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,colorRampPalette)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,shortest_paths)
importFrom(magrittr,"%>%")
importFrom(masstools,get_os)
importFrom(masstools,sum_formula)
importFrom(methods,.hasSlot)
importFrom(methods,new)
importFrom(metid,construct_database)
importFrom(openxlsx,write.xlsx)
importFrom(pbapply,pblapply)
importFrom(plyr,.)
importFrom(plyr,dlply)
importFrom(purrr,map)
importFrom(purrr,map_dfr)
importFrom(rlang,"!!!")
importFrom(rlang,quos)
importFrom(rstudioapi,getThemeInfo)
importFrom(rstudioapi,hasFun)
importFrom(rstudioapi,isAvailable)
importFrom(stats,ecdf)
importFrom(stats,fisher.test)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,rt)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_trim)
importFrom(tidygraph,activate)
importFrom(tidygraph,centrality_degree)
importFrom(tidygraph,tbl_graph)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,packageDescription)
importFrom(utils,str)
importFrom(utils,tail)