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rgb_dat_to_dcm.m
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rgb_dat_to_dcm.m
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function varargout = rgb_dat_to_dcm(varargin)
% JPG_TO_DCM MATLAB code for jpg_to_dcm.fig
% JPG_TO_DCM, by itself, creates a new JPG_TO_DCM or raises the existing
% singleton*.
%
% H = JPG_TO_DCM returns the handle to a new JPG_TO_DCM or the handle to
% the existing singleton*.
%
% JPG_TO_DCM('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in JPG_TO_DCM.M with the given input arguments.
%
% JPG_TO_DCM('Property','Value',...) creates a new JPG_TO_DCM or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before jpg_to_dcm_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to jpg_to_dcm_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help jpg_to_dcm
% Last Modified by GUIDE v2.5 18-Dec-2013 13:43:10
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @jpg_to_dcm_OpeningFcn, ...
'gui_OutputFcn', @jpg_to_dcm_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before jpg_to_dcm is made visible.
function jpg_to_dcm_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to jpg_to_dcm (see VARARGIN)
% Choose default command line output for jpg_to_dcm
handles.output = hObject;
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes jpg_to_dcm wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = jpg_to_dcm_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in DicomButton.
function DicomButton_Callback(hObject, eventdata, handles)
% hObject handle to DicomButton (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global dicompath
[name dicompath] = uigetfile( ...
{ '*.sdcopen;*.dcm','Dicom (*.dcm,*.sdcopen)'; ...
'*.*', 'All Files (*.*)'}, ...
'Select a Dicom', ...
'MultiSelect', 'off');
set( handles.dicomName,'String',fullfile(dicompath,name));
global dcm_header
dicom_filename = get(handles.dicomName,'String');
dcm_header = dicominfo(dicom_filename);
set(handles.seriesNumber,'String',num2str(dcm_header.SeriesNumber+5));
% --- Executes on button press in jpgButton.
function jpgButton_Callback(hObject, eventdata, handles)
% hObject handle to jpgButton (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global dicompath
% [ folder_name ] = uigetdir(dicompath,'Select Location of JPG');
[file_name,folder_name] = uigetfile( ...
{ '*.dat;*.JPG;*.jpeg','RGB Dat (*.dat)'; ...
'*.*', 'All Files (*.*)'}, ...
'Select a RGB dat file', ...
'MultiSelect', 'off',...
dicompath);
set( handles.jpgFolder,'String',fullfile(dicompath,file_name));
function jpgFolder_Callback(hObject, eventdata, handles)
% hObject handle to jpgFolder (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of jpgFolder as text
% str2double(get(hObject,'String')) returns contents of jpgFolder as a double
% --- Executes during object creation, after setting all properties.
function jpgFolder_CreateFcn(hObject, eventdata, handles)
% hObject handle to jpgFolder (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function dicomName_Callback(hObject, eventdata, handles)
% hObject handle to dicomName (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of dicomName as text
% str2double(get(hObject,'String')) returns contents of dicomName as a double
% --- Executes during object creation, after setting all properties.
function dicomName_CreateFcn(hObject, eventdata, handles)
% hObject handle to dicomName (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function seriesNumber_Callback(hObject, eventdata, handles)
% hObject handle to seriesNumber (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of seriesNumber as text
% str2double(get(hObject,'String')) returns contents of seriesNumber as a double
% --- Executes during object creation, after setting all properties.
function seriesNumber_CreateFcn(hObject, eventdata, handles)
% hObject handle to seriesNumber (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in convertButton.
function convertButton_Callback(hObject, eventdata, handles)
% hObject handle to convertButton (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
dicom_filename = get(handles.dicomName,'String');
dcm_header = dicominfo(dicom_filename);
rgb_file = get(handles.jpgFolder,'String')
fid = fopen(rgb_file);
RGB = fread(fid,'uint8');
xres = round( ( numel(RGB)/3 )^(1/3))
RGB = reshape(RGB,[3 xres xres xres]);
sname = get(handles.seriesName,'String');
new_series = str2num( get(handles.seriesNumber,'String'));
%New Series
dcm_header.SeriesInstanceUID = dicomuid;
h = figure('Name','Preview');
him = [];
for ii=1:size(RGB,4)
D = RGB(:,:,:,ii);
D = permute(D,[2 3 1]);
if ii == 1
him = imshow(D);
else
him = imshow(D);
%set(him,'CData',D); % just update the data, not the whole figure
end
drawnow
dcm_new = dcm_header;
dcm_new.SeriesNumber = new_series;
dcm_new.SeriesDescription = sname;
dcm_new.InstanceNumber = ii -1;
name = sprintf('I%03d.dcm.sdcopen',ii-1);
dicomwrite(D,name,dcm_new);
end
close(h)
function seriesName_Callback(hObject, eventdata, handles)
% hObject handle to seriesName (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of seriesName as text
% str2double(get(hObject,'String')) returns contents of seriesName as a double
% --- Executes during object creation, after setting all properties.
function seriesName_CreateFcn(hObject, eventdata, handles)
% hObject handle to seriesName (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end