Bump version: 1.1.4 → 1.1.5

Author: pdiakumis

.bumpversion.toml

@@ -1,5 +1,5 @@
 [tool.bumpversion]
-current_version = "1.1.4"
+current_version = "1.1.5"
 search = "{current_version}"
 replace = "{new_version}"
 message = "Bump version: {current_version} → {new_version}"

.github/workflows/conda_docker_pkgdown.yml

@@ -9,7 +9,7 @@ env:
   recipe_path: deploy/conda/recipe
   env_yaml_path: deploy/conda/env/yaml
   env_lock_path: deploy/conda/env/lock
-  VERSION: '1.1.4' # bump
+  VERSION: '1.1.5' # bump
 
 jobs:
   condarise-dockerise-document:

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: RNAsum
 Title: A Robust Tool for Performing Transcriptome Profiling on Cancer Data
-Version: 1.1.4
+Version: 1.1.5
 Authors@R: 
     c(person(given = "Sehrish",
              family = "Kanwal",

README.md

@@ -197,7 +197,7 @@ export PATH="${rnasum_cli}:${PATH}"
 ```
 
     $ rnasum.R --version
-    1.1.4 
+    1.1.5 
 
     $ rnasum.R --help
     Usage
@@ -253,9 +253,6 @@ export PATH="${rnasum_cli}:${PATH}"
     --log
             Log2 transform data before normalisation.
 
-    --sv_tsv=SV_TSV
-            File path to text file with genes related to structural variation.
-
     --norm=NORM
             Normalisation method.
 
@@ -295,6 +292,9 @@ export PATH="${rnasum_cli}:${PATH}"
     --subject_id=SUBJECT_ID
             Subject ID.
 
+    --sv_tsv=SV_TSV
+            File path to text file with genes related to structural variation.
+
     --top_genes=TOP_GENES
             Number of top ranked genes to be presented in report.
 

deploy/conda/env/yaml/rnasum.yaml

@@ -6,4 +6,4 @@ channels:
   - bioconda
 
 dependencies:
-  - r-rnasum ==1.1.4 # bump
+  - r-rnasum ==1.1.5 # bump

deploy/conda/recipe/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: r-rnasum
-  version: 1.1.4 # bump
+  version: 1.1.5 # bump
 
 source:
   path: ../../../