Cargo.toml

[package]
name = "htsget-search"
version = "0.7.1"
rust-version = "1.74"
authors = ["Christian Perez Llamas <chrispz@gmail.com>", "Marko Malenic <mmalenic1@gmail.com>", "Roman Valls Guimera <brainstorm@nopcode.org>"]
edition = "2021"
description = "The primary mechanism by which htsget-rs interacts with, and processes bioinformatics files. It does this by using noodles to query files and their indices."
license = "MIT"
documentation = "https://github.com/umccr/htsget-rs/blob/main/htsget-search/README.md"
homepage = "https://github.com/umccr/htsget-rs/blob/main/htsget-search/README.md"
repository = "https://github.com/umccr/htsget-rs"

[features]
s3-storage = [
    "dep:bytes",
    "dep:aws-sdk-s3",
    "dep:aws-config",
    "dep:pin-project-lite",
    "htsget-config/s3-storage",
    "htsget-test/s3-storage",
    "htsget-test/aws-mocks"
]
url-storage = [
    "dep:bytes",
    "dep:reqwest",
    "dep:pin-project-lite",
    "htsget-config/url-storage",
    "htsget-test/url-storage"
]
default = []

[dependencies]
# Axum server
url = "2"
hyper = { version = "1", features = ["http1", "http2", "server"] }
hyper-util = "0.1"
tower-http = { version = "0.5", features = ["trace", "cors", "fs"] }
http = "1"
axum = "0.7"
rustls-pemfile = "2"
tower = { version = "0.4", features = ["make"] }

# Async
tokio-rustls = "0.26"
tokio = { version = "1", features = ["macros", "rt-multi-thread"] }
tokio-util = { version = "0.7", features = ["io", "compat"] }
futures = { version = "0.3" }
futures-util = "0.3"
async-trait = "0.1"

# Noodles
noodles = { version = "0.74", features = ["async", "core", "bgzf", "bam", "bcf", "cram", "csi", "sam", "tabix", "vcf"] }

# Amazon S3
bytes = { version = "1", optional = true }
aws-sdk-s3 = { version = "1", optional = true }
aws-config = { version = "1", optional = true }

# Url storage
reqwest = { version = "0.12", features = ["rustls-tls", "stream"], default-features = false, optional = true }
pin-project-lite = { version = "0.2", optional = true }

# Error control, tracing, config
thiserror = "1"
htsget-config = { version = "0.10.0", path = "../htsget-config", default-features = false }
htsget-test = { version = "0.6.1", path = "../htsget-test", features = ["http"], default-features = false }
tracing = "0.1"
base64 = "0.22"
serde = "1"

[dev-dependencies]
tempfile = "3"
data-url = "0.3"

# Axum server
reqwest = { version = "0.12", default-features = false, features = ["rustls-tls"] }

criterion = { version = "0.5", features = ["async_tokio"] }

[[bench]]
name = "search-benchmarks"
harness = false
path = "benches/search_benchmarks.rs"