From 9727a98921a722501895305fdb74c15c84b51bba Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 10:12:49 +0200
Subject: [PATCH 1/7] fix deprecated function

---
 ena_upload/templates/ENA_template_runs.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ena_upload/templates/ENA_template_runs.xml b/ena_upload/templates/ENA_template_runs.xml
index d4a35ea..4c6d2f6 100755
--- a/ena_upload/templates/ENA_template_runs.xml
+++ b/ena_upload/templates/ENA_template_runs.xml
@@ -11,7 +11,7 @@ def attributetest(row, column):
     xmlns:xi="http://www.w3.org/2001/XInclude"
     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
     xsi:noNamespaceSchemaLocation="ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_6/SRA.run.xsd">
-    <py:for each="alias, experiment_alias in run_groups.iteritems()">
+    <py:for each="alias, experiment_alias in run_groups.items()">
     <RUN alias="${alias}" center_name="${center}">
         <EXPERIMENT_REF refname="${experiment_alias}"/>
         <DATA_BLOCK>

From 5238c70f14e8048e51f40b18b819e1e740a2c369 Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 10:12:55 +0200
Subject: [PATCH 2/7] lock versions

---
 .gitignore       |  3 +++
 requirements.txt | 10 +++++-----
 2 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/.gitignore b/.gitignore
index 229114a..7e6c35e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,5 @@
 .vscode/launch.json
 .secret.yml
+build/
+ena_upload_cli.egg-info/
+ena_upload/__pycache__/
diff --git a/requirements.txt b/requirements.txt
index 25ba192..fbfa238 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
-genshi
-lxml
+genshi==0.7.7
+lxml==4.9.3
 pandas>=1.2
-pyyaml
-requests
-openpyxl
+pyyaml==5.1
+requests==2.31.0
+openpyxl==3.1.2

From ba2fd642e9144c582d22238332e4412407243da3 Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 10:14:14 +0200
Subject: [PATCH 3/7] lock pandas

---
 requirements.txt | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index fbfa238..a96e561 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
-genshi==0.7.7
-lxml==4.9.3
-pandas>=1.2
+genshi==0.7
+lxml==4.9
+pandas==2.0
 pyyaml==5.1
-requests==2.31.0
-openpyxl==3.1.2
+requests==2.31
+openpyxl==3.1

From 225a3bc700a3e58b4554ea93316218dc7a5b6bba Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 11:37:40 +0200
Subject: [PATCH 4/7] full version

---
 requirements.txt | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index a96e561..1b91913 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
-genshi==0.7
-lxml==4.9
-pandas==2.0
+genshi==0.7.7
+lxml==4.9.3
+pandas==2.0.3
 pyyaml==5.1
-requests==2.31
-openpyxl==3.1
+requests==2.31.0
+openpyxl==3.1.2

From ef6e6dac919a5836a152d6593239af7472e2d3bc Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 13:05:50 +0200
Subject: [PATCH 5/7] update requirements

---
 requirements.txt | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 1b91913..9a42b37 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
-genshi==0.7.7
-lxml==4.9.3
-pandas==2.0.3
-pyyaml==5.1
-requests==2.31.0
-openpyxl==3.1.2
+genshi==0.7.*
+lxml==4.9.3, <= 5.0.0
+pandas>=2.0.3 , <= 3.0.0
+pyyaml==5.* 
+requests==2.31.0 , <= 3.0.0
+openpyxl==3.1.2 , <= 4.0.0

From 6034080a8c23e110845cc8ee33cae6411b3aab15 Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 13:06:48 +0200
Subject: [PATCH 6/7] fix greater than sign

---
 requirements.txt | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 9a42b37..8958e29 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
 genshi==0.7.*
-lxml==4.9.3, <= 5.0.0
+lxml>=4.9.3, <= 5.0.0
 pandas>=2.0.3 , <= 3.0.0
 pyyaml==5.* 
-requests==2.31.0 , <= 3.0.0
-openpyxl==3.1.2 , <= 4.0.0
+requests>=2.31.0 , <= 3.0.0
+openpyxl>=3.1.2 , <= 4.0.0

From e89dcf2ac85b58d8bfba0de367b576ce8db621a7 Mon Sep 17 00:00:00 2001
From: bedroesb <bedro@psb.vib-ugent.be>
Date: Tue, 29 Aug 2023 13:23:15 +0200
Subject: [PATCH 7/7] VERSION

---
 ena_upload/_version.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ena_upload/_version.py b/ena_upload/_version.py
index 22049ab..63af887 100644
--- a/ena_upload/_version.py
+++ b/ena_upload/_version.py
@@ -1 +1 @@
-__version__ = "0.6.2"
+__version__ = "0.6.3"