From 87a62601dc01e809c9b7e54984abfd53745394c7 Mon Sep 17 00:00:00 2001
From: Wolfgang Maier <wolfgang.maier@biologie.uni-freiburg.de>
Date: Fri, 24 Nov 2017 13:08:18 +0100
Subject: [PATCH] add tool_conf.xml

---
 tool-config/mimodd_tool_conf.xml | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 tool-config/mimodd_tool_conf.xml

diff --git a/tool-config/mimodd_tool_conf.xml b/tool-config/mimodd_tool_conf.xml
new file mode 100644
index 0000000..25520af
--- /dev/null
+++ b/tool-config/mimodd_tool_conf.xml
@@ -0,0 +1,23 @@
+<toolbox>
+    <section id="mimodd" name="MiModD">
+      <label id="mimodd_converters" text="MiModD Format Handlers" />
+        <tool file="mimodd/fileinfo.xml"/>
+        <tool file="mimodd/sam_header.xml" />
+        <tool file="mimodd/convert.xml" />
+        <tool file="mimodd/reheader.xml" />
+        <tool file="mimodd/bamsort.xml" />
+        <tool file ="mimodd/rebase.xml" />
+      <label id="mimodd_utilities" text="MiModD Core Tools" />
+        <tool file="mimodd/snap_caller.xml" />
+        <tool file="mimodd/snp_caller_caller.xml" />
+        <tool file="mimodd/varextract.xml" />
+        <tool file="mimodd/covstats.xml" />
+        <tool file="mimodd/deletion_predictor.xml" />
+        <tool file="mimodd/vcf_filter.xml" />
+        <tool file="mimodd/annotate_variants.xml" />
+        <tool file="mimodd/varreport.xml" />
+        <tool file="mimodd/cloudmap.xml" />
+      <label id="mimodd_compatibility" text="MiModD Accessories" />
+        <tool file="mimodd/snpeff_genomes.xml" />
+    </section>
+</toolbox>