Description of the count step output missing

[fgualdr]

Hi,

I am trying to use part of the SQUIRE code.
Following the count step 5 files are generated:

".out_abund.txt"

".out.gtf"

".out_refGenecounts.txt"

".out_subFcounts.txt"

".out_TEcounts.txt"

Can I ask for a quick description of each with the header.
at least the refGenecount is missing the header.
Thanks a lot

Francesco

[polklin]

Hello @fgualdr,

I am trying to understand the outputs too. For what it worth the *_TEcounts.txt is described in the supplementary Table S1