We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? # to your account
Dear SINCERA team
I'm trying to use gene-cell matrix with ENSEMBL gene ID and celltype.enrichment function calls error like:
`> sc <- celltype.enrichment(sc, id.type="ENSEMBL", species="HOMSA") Sincera: cell type enrichment analysis ...
Using differentially expressed genes for cell type enrichment analysis
Number of diff genes ( pvalue < 0.01 ) per cluster
1 2 3 4 5 6 7 8 7133 2611 10401 1278 550 21 1112 562 Error in data.frame(HOMSA.ENSEMBL = names(eg2ensembl), MUSMU.ENSEMBL = as.character(eg2ensembl)) : object 'eg2ensembl' not found`
It seems that in the celltype.R code, near line 1336, have some problem
} else if (id.type=="ENSEMBL") { ensembl2ensembl <- idConverter(genome, srcSpecies="HOMSA", destSpecies="MUSMU", srcIDType="ENSEMBL", destIDType="ENSEMBL") genome.mapping <- data.frame(HOMSA.ENSEMBL=names(eg2ensembl), MUSMU.ENSEMBL=as.character(eg2ensembl))
because eg2ensembl object does not exists and instead, ensembl2ensembl object exists.
Waiting for your response. Thank you
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Dear SINCERA team
I'm trying to use gene-cell matrix with ENSEMBL gene ID and celltype.enrichment function calls error like:
`> sc <- celltype.enrichment(sc, id.type="ENSEMBL", species="HOMSA")
Sincera: cell type enrichment analysis ...
Using differentially expressed genes for cell type enrichment analysis
Number of diff genes ( pvalue < 0.01 ) per cluster
1 2 3 4 5 6 7 8
7133 2611 10401 1278 550 21 1112 562
Error in data.frame(HOMSA.ENSEMBL = names(eg2ensembl), MUSMU.ENSEMBL = as.character(eg2ensembl)) : object 'eg2ensembl' not found`
It seems that in the celltype.R code, near line 1336, have some problem
because eg2ensembl object does not exists and instead, ensembl2ensembl object exists.
Waiting for your response. Thank you
The text was updated successfully, but these errors were encountered: