Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

NAs in assoc file #149

Open
lubapardo opened this issue Sep 28, 2023 · 0 comments
Open

NAs in assoc file #149

lubapardo opened this issue Sep 28, 2023 · 0 comments

Comments

@lubapardo
Copy link

I am getting a lot of NAs when running single test rvtest using score method. I can understand that for rare variation the association will fail but I also have SNPs that are common and still the association analysis did not work. Is there anywhere where I can find are the reasons for the NAs in the ouput assoc files?
regards,
chr22.dose.vcf.gz" --out "outfile" --covar "phenocov _ --covar-name "age ,sex,C1,C2,C3,C4" --pheno "pheno.txt" --dosage "DS" --single "score" --freqLower 0.010000 --hide-covar

Luba Pardo

# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant