DESCRIPTION

Package: SeqArray
Type: Package
Title: Data Management of Large-Scale Whole-Genome Sequence Variant Calls
Version: 1.46.1
Date: 2024-12-11
Depends: R (>= 3.5.0), gdsfmt (>= 1.31.1)
Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb, Biostrings,
        S4Vectors
LinkingTo: gdsfmt
Suggests: Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate, digest,
        crayon, knitr, markdown, rmarkdown, Rsamtools, VariantAnnotation
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
        email="zhengx@u.washington.edu", comment=c(ORCID="0000-0002-1390-0708")),
        person("Stephanie", "Gogarten", role="aut", email="sdmorris@uw.edu"),
        person("David", "Levine", role="ctb"),
        person("Cathy", "Laurie", role="ctb"))
Description: Data management of large-scale whole-genome sequencing variant
        calls with thousands of individuals: genotypic data (e.g., SNVs, indels
        and structural variation calls) and annotations in SeqArray GDS files
        are stored in an array-oriented and compressed manner, with efficient
        data access using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
LazyData: true
URL: https://github.com/zhengxwen/SeqArray
BugReports: https://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, DataRepresentation, Sequencing, Genetics