diff --git a/.travis.yml b/.travis.yml index e393acf..87bda7b 100644 --- a/.travis.yml +++ b/.travis.yml @@ -11,7 +11,6 @@ r_binary_packages: - rmarkdown - knitr -# Install packages from github -r_github_packages: - - zhengxwen/gdsfmt +bioc_packages: + - gdsfmt diff --git a/DESCRIPTION b/DESCRIPTION index 432da68..0f2578c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: SeqArray Type: Package Title: Data Management of Large-scale Whole-genome Sequence Variant Calls -Version: 1.25.6 -Date: 2019-10-23 +Version: 1.26.0 +Date: 2019-10-31 Depends: R (>= 3.5.0), gdsfmt (>= 1.18.0) Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb, Biostrings, S4Vectors @@ -16,7 +16,7 @@ Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"), person("Cathy", "Laurie", role="ctb")) Description: Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels - and structural variation calls) and annotations in SeqArray files are + and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language. License: GPL-3 diff --git a/appveyor.yml b/appveyor.yml index 637443c..1e3e9b4 100644 --- a/appveyor.yml +++ b/appveyor.yml @@ -19,7 +19,6 @@ environment: BIOC_USE_DEVEL: FALSE build_script: - - travis-tool.sh install_github zhengxwen/gdsfmt - travis-tool.sh install_bioc_deps - travis-tool.sh install_deps diff --git a/vignettes/OverviewSlides.Rmd b/vignettes/OverviewSlides.Rmd index 14f8e71..5a05c22 100644 --- a/vignettes/OverviewSlides.Rmd +++ b/vignettes/OverviewSlides.Rmd @@ -225,6 +225,6 @@ Department of Biostatistics at University of Washington -- Seattle Genetic Analysis Center: -- Dr. Stephanie M. Gogarten -- Dr. David Levine -- Dr. Cathy Laurie +- Stephanie M. Gogarten +- David Levine +- Cathy Laurie