SeqArray_1.10.0 (BioC 3.2 Release)

• new functions seqGDS2SNP(), seqOptimize(), seqMissing(), seqAlleleFreq(), seqNumAllele(), seqSetFilterChrom(), seqSNP2GDS(), seqBED2GDS(), seqAlleleCount() and seqResetFilter()
• supported by the SNPRelate package
• support seqApply(..., margin="by.sample")
• "intersection" and "push+intersection" in seqSetFilter()
• a new function seqExport()
• new argument ".useraw" in seqApply()
• improve access speed (+50%, benchmark on calling seqApply(..., FUN=function(x) {}))
• seqCompress.Option is renamed to seqStorage.Option
• "ZIP_RA" is the default value in seqStorage.Option() and other functions instead of "ZIP_RA.max"
• seqSetFilter() becomes a S4 method