This folder contains the code to run the composition analysis using data from observed species.
- WRAPPER_COMPOSITION_ANALYSIS.R
Description: This file contains all of the code to run the composition analysis. The code reads in the data and creates the transect by species matrix for the NMDS. It also contains the code to generate the JAGS file for the Bayesian analysis. The code to process the model results is included (e.g., for Figure 1b).