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@CahanLab

CahanLab

Algorithms for engineering the fate and function of stem cells

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  1. singleCellNet Public

    SingleCellNet: classify single cells across species and platforms

    R 136 29

  2. PySingleCellNet Public

    singleCellNet in Python

    Jupyter Notebook 14 10

  3. PACNet Public

    Platform-agnostic CellNet

    JavaScript 3 1

  4. epoch Public

    gene regulatory network reconstruction from scRNA-Seq

    R 24 12

Repositories

Showing 10 of 20 repositories
  • EG-CLR Public

    Enhancer-Gene Inference via CLR

    Python 0 0 0 0 Updated Mar 21, 2025
  • PySingleCellNet Public

    singleCellNet in Python

    Jupyter Notebook 14 MIT 10 1 1 Updated Feb 19, 2025
  • DKK1_OS Public
    Python 0 0 0 0 Updated Nov 25, 2024
  • onesc_paper Public

    Analysis steps associated with oneSC paper

    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 20, 2024
  • oneSC Public

    infer transcription factors circuits, simulate single cell expression trajectories

    Python 4 2 0 0 Updated Nov 7, 2024
  • stemfinder_paper Public

    scripts for reproducible analysis of the results presented in the stemfinder paper

    R 0 MIT 0 0 0 Updated Sep 21, 2024
  • stemfinder Public

    estimate cell fate potency from single cell RNA-seq data

    R 2 0 1 0 Updated Sep 21, 2024
  • fruitfly_organogenesis Public

    Code for analysis of the fruitfly organogenesis paper.

    R 0 0 0 0 Updated Jul 17, 2024
  • DFMO_EwingSarcoma Public

    Code for the transcriptomic analysis described in the paper "Polyamine Depletion Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis"

    R 0 0 0 0 Updated Jun 20, 2024
  • BMSC_23 Public
    Python 0 0 0 0 Updated May 29, 2024
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