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@EngqvistLab

EngqvistLab

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  1. Tome Tome Public

    A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

    Python 57 15

  2. fetch_microbial_growth_temperatures fetch_microbial_growth_temperatures Public

    Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.

    Python 6 1

  3. UniRep50 UniRep50 Public

    A slighlty modified version of the UniRep model

    Jupyter Notebook 5 2

  4. DeepET_reps DeepET_reps Public

    An installable library to get DeepET representations.

    Jupyter Notebook 3 2

  5. orgtools orgtools Public

    A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.

    Python 2

  6. cheminformatics cheminformatics Public

    Jupyter Notebook 2

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