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@Grice-Lab

Grice Lab

Elizabeth Grice Research Lab at the University of Pennsylvania

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  1. AlignerBoost AlignerBoost Public

    AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework

    Java 11 2

  2. HmmUFOtu HmmUFOtu Public

    An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

    C++ 11 9

  3. MSGseqTK MSGseqTK Public

    A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm

    C++ 1

  4. EAGenomeAssembly EAGenomeAssembly Public

    Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)

    Shell

  5. DFUStrainsWGS DFUStrainsWGS Public

    This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)

    Shell

  6. IowaWound IowaWound Public

    Iowa Wound Pain analyses 2020

    R

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