Grice Lab
- Philadelphia, PA
- http://www.med.upenn.edu/gricelab/
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AlignerBoost
AlignerBoost PublicAlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
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EAGenomeAssembly
EAGenomeAssembly PublicBreaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)
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DFUStrainsWGS
DFUStrainsWGS PublicThis repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)
Shell
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Repositories
- HmmUFOtu Public
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
Grice-Lab/HmmUFOtu’s past year of commit activity - DFUStrainsWGS Public
This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)
Grice-Lab/DFUStrainsWGS’s past year of commit activity - AlignerBoost Public
AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
Grice-Lab/AlignerBoost’s past year of commit activity - EAGenomeAssembly Public
Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)
Grice-Lab/EAGenomeAssembly’s past year of commit activity - MSGseqTK Public
A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm
Grice-Lab/MSGseqTK’s past year of commit activity
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