Code

Support for CROCO 3D velocities#1641

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erikvansebille merged 53 commits intomasterOceanParcels/Parcels:masterfrom croco_3D_velocitiesOceanParcels/Parcels:croco_3D_velocitiesCopy head branch name to clipboardOct 16, 2024

Commits

Commits on Aug 6, 2024

• Add RK4 version of CROCO 3D kernel

  erikvansebille

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• Start implementing fieldset.from_croco()

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Commits on Aug 7, 2024

• Using MITgcm-style horizonal interpolation for CROCO

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Cleaning up spaces in parcels.h

  erikvansebille

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• Fixing CROCO upper layer sampling

  erikvansebille

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• Setting CROCO vertical interpolation method to linear in JIT

  erikvansebille

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• Rewriting CROCO 3D advection kernel to use fieldset.UVW sampling

  erikvansebille

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• Fix loading of CROCO grid when dimension lengths are 1 larger than variable sizes

  erikvansebille

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• Adding support for 2D advection in from_croco

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• Temporarily silencing assert in pop dask chunking test

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Commits on Aug 8, 2024

• Support for sampling depth in m in croco sigma layers

  erikvansebille

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• Merge branch 'JIT_keeping_track_highest_errorcode' into croco_3D_velocities

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• Creating extra 3DSigma category for sigma vector fields

  erikvansebille

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• Adding non-vectorfield-sampling support for croco in scipy

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• Simplifying code by not requiring H field as part of VectorField class

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• Minor fix in field error handling

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Commits on Aug 9, 2024

• xfail dask test_pop

  

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• Undoing temporary commenting of assert in example_dask_chunking as now covered by xfail

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• Using time in fieldset.H interpolation (to possibly allow for time-evolving depth layers?

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• Adding CROCO tutorial

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• Updating CROCO tutorial

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• Minor change to CROCO 3D algorithm

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• Merge branch 'JIT_keeping_track_highest_errorcode' into croco_3D_velocities

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• Fixing bug in codegenerator error-code handling

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• Merge branch 'master' into croco_3D_velocities

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• Update algorithm description in croco 3D tutorial

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• Adding nbsphinx-thumbnail tag to first plot of croco notebook, to show that in tutorial overview

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Commits on Aug 12, 2024

• Expanding docstring of fieldset.from_croco

  erikvansebille

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• Merge branch 'master' into croco_3D_velocities

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Commits on Aug 16, 2024

• Merge commit '7c8bbc76c0c2d9936b52867a9998fccf220f9042' into croco-merge

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• Merge branch 'master' into croco_3D_velocities

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• Merge branch 'master' into croco_3D_velocities

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Commits on Aug 27, 2024

• Merge branch 'master' into croco_3D_velocities

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Commits on Aug 30, 2024

• Merge branch 'master' into croco_3D_velocities

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• Updating Field init to not check for W interp_method in croco

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• Removing redef of VectorType

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• Merge branch 'master' into croco_3D_velocities

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Commits on Sep 6, 2024

• Merge branch 'master' into croco_3D_velocities

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• Add filter for velocity interpolation warning for CROCO

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Commits on Sep 16, 2024

• Merge branch 'master' into croco_3D_velocities

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Commits on Sep 17, 2024

• Adding normal field evaluation to CROCO unit test

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Adding support for 'normal' Fields in CROCO

  erikvansebille

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• Always passing H field to particle_loop for CROCO

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• Adding H field only if it exists

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• Merge branch 'master' into croco_3D_velocities

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Commits on Oct 14, 2024

• Merge branch 'master' into croco_3D_velocities

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• Adding alert box to discuss w versus omega choice in from_croco

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• Adding 3DSigma vector_type

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Commits on Oct 15, 2024

• Fixing review comments

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• Reverting change in review

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Commits on Oct 16, 2024

• update _FileBuffer signature to avoid kwargs

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