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Update reactome version #29

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Update reactome version #29

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ddomingof
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@ddomingof ddomingof commented Mar 26, 2020

  • TODO: Fix the SPARQL query to get the names of all pathways and their identifiers

GET_ALL_PATHWAYS = """
SELECT DISTINCT ?uri_id ?name
WHERE {
?uri_id rdf:type biopax3:Pathway .
?uri_id biopax3:displayName ?name .
}
"""

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codecov bot commented Mar 26, 2020

Codecov Report

Merging #29 into master will not change coverage by %.
The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #29   +/-   ##
=======================================
  Coverage   37.69%   37.69%           
=======================================
  Files          28       28           
  Lines        2207     2207           
  Branches      490      490           
=======================================
  Hits          832      832           
  Misses       1310     1310           
  Partials       65       65           
Impacted Files Coverage Δ
src/pathme/constants.py 100.00% <100.00%> (ø)

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