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@datajoint

DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 176 86

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 12 139

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 37

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 11 48

Repositories

Showing 10 of 92 repositories
  • element-zstack Public

    DataJoint Element for volumetric data analysis using Cellpose

    datajoint/element-zstack’s past year of commit activity
    Python 0 MIT 8 1 0 Updated May 20, 2025
  • element-session Public

    DataJoint Element for session management

    datajoint/element-session’s past year of commit activity
    Python 1 MIT 18 1 0 Updated May 20, 2025
  • element-miniscope Public

    DataJoint Element for miniscope calcium imaging analysis with CaImAn

    datajoint/element-miniscope’s past year of commit activity
    Jupyter Notebook 2 MIT 14 2 2 Updated May 20, 2025
  • element-lab Public

    DataJoint Element for lab management

    datajoint/element-lab’s past year of commit activity
    Python 1 MIT 16 2 0 Updated May 20, 2025
  • element-interface Public

    Common functions for the DataJoint Elements

    datajoint/element-interface’s past year of commit activity
    Python 3 MIT 17 9 (1 issue needs help) 3 Updated May 20, 2025
  • element-facemap Public

    DataJoint Element for behavioral analysis with Facemap

    datajoint/element-facemap’s past year of commit activity
    Jupyter Notebook 3 MIT 13 0 0 Updated May 20, 2025
  • element-deeplabcut Public

    DataJoint Element for behavioral analysis with DeepLabCut

    datajoint/element-deeplabcut’s past year of commit activity
    Jupyter Notebook 13 MIT 39 8 (1 issue needs help) 0 Updated May 20, 2025
  • element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    datajoint/element-calcium-imaging’s past year of commit activity
    Jupyter Notebook 11 MIT 48 14 0 Updated May 20, 2025
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 37 26 (2 issues need help) 0 Updated May 20, 2025
  • element-electrode-localization Public

    DataJoint Element for localizing Neuropixels electrodes

    datajoint/element-electrode-localization’s past year of commit activity
    Jupyter Notebook 0 MIT 9 3 0 Updated May 20, 2025

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