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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 660 379

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 344 87

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 320 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 256 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 150 95

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 121 22

Repositories

Showing 10 of 194 repositories
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 344 87 44 (3 issues need help) 7 Updated May 8, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 660 GPL-2.0 379 86 (1 issue needs help) 11 Updated May 8, 2025
  • slurm Public Forked from SchedMD/slurm

    Slurm: A Highly Scalable Workload Manager

    flatironinstitute/slurm’s past year of commit activity
    C 1 708 0 0 Updated May 8, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 46 MIT 4 1 4 Updated May 7, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,426 0 12 Updated May 7, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 95 MIT 9 113 (3 issues need help) 2 Updated May 7, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 8 MIT 0 28 5 Updated May 6, 2025
  • slurm-prometheus-exporter Public

    Prometheus exporter for slurm job/node data

    flatironinstitute/slurm-prometheus-exporter’s past year of commit activity
    Haskell 38 9 5 1 Updated May 5, 2025
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 41 Apache-2.0 3 4 0 Updated May 5, 2025
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 45 Apache-2.0 9 7 0 Updated May 5, 2025
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