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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 218 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 201 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 87 37

  5. task-execution-schemas task-execution-schemas Public

    83 29

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    83 39

Repositories

Showing 10 of 126 repositories
  • va-spec Public

    An information model for representing variant annotations.

    Jupyter Notebook 18 Apache-2.0 5 110 (2 issues need help) 1 Updated Mar 28, 2025
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    Jupyter Notebook 14 Apache-2.0 4 10 5 Updated Mar 28, 2025
  • connect-2025-hackathon Public

    April Connect 2025 hackathon session

    Python 0 Apache-2.0 0 0 0 Updated Mar 28, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    Python 1 Apache-2.0 1 1 0 Updated Mar 28, 2025
  • gks-portal Public
    0 MIT 1 13 0 Updated Mar 28, 2025
  • cat-vrs-python Public

    GA4GH Categorical Variation Representation Python Implementation

    Python 1 Apache-2.0 3 1 0 Updated Mar 28, 2025
  • refget Public

    GA4GH Refget specifications docs

    15 8 20 0 Updated Mar 28, 2025
  • ga4gh-starter-kit-common Public

    Common utils library for GA4GH Starter Kit web services

    Java 1 Apache-2.0 2 6 2 Updated Mar 27, 2025
  • htsget-compliance Public

    Compliance testing for htsget deployments

    Python 1 Apache-2.0 2 2 (2 issues need help) 0 Updated Mar 27, 2025
  • data-repository-service-schemas Public

    A repository for the schemas used for the Data Repository Service.

    61 Apache-2.0 53 65 21 Updated Mar 24, 2025