Repositories list

• DIA-BERT

  Public
  DIA-BERT: a pre-trained model for data-independent acquisition mass spectrometry-based proteomics data analysis

  Python

  •

  Other

  •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• iDIA-QC

  Public template
  Python

  •

  Academic Free License v3.0

  •2•1•1•0•Updated Feb 17, 2025Feb 17, 2025

• PTV-1

  Public
  Python

  •1•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• DDA-BERT

  Public
  R

  •

  Other

  •1•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• FAXP

  Public
  R

  •

  BSD 2-Clause "Simplified" License

  •2•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• TPDlibV2

  Public
  R

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• metaExpertPro

  Public
  Perl

  •

  Academic Free License v3.0

  •1•2•0•0•Updated Aug 27, 2024Aug 27, 2024

• MFT

  Public
  Multi-omics Follicular Thyroid

  R

  •1•0•0•0•Updated Aug 25, 2024Aug 25, 2024

• CVDSBA

  Public
  The project data analysis code

  R

  •24•18•0•0•Updated Aug 6, 2024Aug 6, 2024

• TOS

  Public
  R

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• zzov

  Public
  Proteomic landscape of epithelial ovarian cancers

  R

  •1•0•0•0•Updated May 24, 2024May 24, 2024

• HSGA

  Public
  0•0•0•0•Updated Mar 25, 2024Mar 25, 2024

• Draft-human-brain-spatial-proteome-atlas

  Public
  R

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• DIArt

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

• GNHS

  Public
  Population serum proteomics uncovers prognostic protein classifier and molecular mechanisms for metabolic syndrome

  R

  •1•1•0•0•Updated Jul 31, 2023Jul 31, 2023

• proteomExV2

  Public
  R

  •0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

• PulseDIA

  Public
  R

  •2•3•0•0•Updated May 22, 2023May 22, 2023

• DPHLv2

  Public
  R

  •1•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• DIAToolComp

  Public
  R

  •0•0•0•0•Updated Jan 28, 2023Jan 28, 2023

• HCC

  Public
  HTML

  •2•0•0•0•Updated Oct 7, 2022Oct 7, 2022

• CVDHZ

  Public
  Systematic investigation of the host response to COVID-19 vaccination using the proteomes of peripheral blood mononuclear cells and serum

  R

  •0•0•0•0•Updated Jul 22, 2022Jul 22, 2022

• CD19-CAR-T

  Public
  This study presents serum proteome dynamics after CAR-T cell infusion and also provides novel diagnostic and therapeutic clues for CRS in B-ALL patients

  0•1•0•0•Updated Jul 13, 2022Jul 13, 2022

• CVDO

  Public
  R

  •0•0•0•0•Updated Mar 4, 2022Mar 4, 2022

• covidpro

  Public
  COVID-19 proteomic database

  0•0•0•0•Updated Jan 17, 2022Jan 17, 2022

• CVDSBR

  Public
  A machine learning-based molecular model to predict COVID-19 sequelae.

  Python

  •2•0•0•0•Updated Jul 23, 2021Jul 23, 2021

• KMDR

  Public
  code for KMDR program

  1•0•0•0•Updated Apr 5, 2021Apr 5, 2021

• batch_server

  Public
  R

  •3•4•0•1•Updated Dec 25, 2020Dec 25, 2020

• proteomeExpert

  Public
  R

  •3•0•0•0•Updated Dec 22, 2020Dec 22, 2020

• DIAtensor

  Public
  DIAtensor is software tool to convert mzXML of data-independent acquisition (DIA) mass spectrometry (MS) to DIA tensor.

  1•7•2•0•Updated Dec 1, 2020Dec 1, 2020

• CVDSBG

  Public
  CVDSBG project

  R

  •0•0•0•0•Updated Nov 5, 2020Nov 5, 2020