DFA and heatmap script #6
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Created a script to read in data, run DFA and output heatmap corresponding to reactions in the model and biomass objective from the solution. There is a bug when running DFA.mlx with the gurobi solver that does not let the DFA function run.
KnockOut script compiles and runs however; the output for geneKO array is all NaN rather than actual values.
# for free
to join this conversation on GitHub.
Already have an account?
# to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Created a script to read in data, run DFA and output heatmap corresponding to reactions in the model and biomass objective from the solution.
There is a bug when running DFA.mlx with the gurobi solver that does not let the DFA function run.