bioinformatic_python_tutorial

Tutorial for sequence handling using python

Including step by step python scripts to (main.sh):

• concatenate forward and reverse fastq files
• extract reads whose barcode start with A or T (for the sack of practice)
• convert fastq to fasta file
• delete N's in fasta file
• format fasta file so that each read takes two lines (header & seq)
• count number of bases for each read, output a tab-separated values (TSV) file
• get reverse complement DNA sequences
• translate nucleotides to proteins

Using BioPython to do the same steps (biopython_tutorial.py).