Merge pull request #1212 from huwjenkins/ctffind_runner-better-error

Raise an error when CTF estimation failed on all images; also add LC_ALL=C to avoid problems in CTFFIND. Fixes #1167. Thanks to @huwjenkins.

src/ctffind_runner.cpp

@@ -463,6 +463,8 @@ void CtffindRunner::joinCtffindResults()
 
 		if (verb > 0 && imic % 60 == 0) progress_bar(imic);
 	}
+	if (MDctf.isEmpty())
+		REPORT_ERROR( (std::string) fn_ctffind_exe + " failed to estimate CTF parameters for any micrograph, exiting...");
 
     if (is_tomo)
     {
@@ -713,7 +715,7 @@ void CtffindRunner::executeCtffind4(long int imic)
 
 	// Write script to run ctffind
 	fh << "#!/usr/bin/env " << fn_shell << std::endl;
-	fh << fn_ctffind_exe << ctffind4_options << " > " << fn_log << " << EOF"<<std::endl;
+	fh << "env LC_ALL=C " << fn_ctffind_exe << ctffind4_options << " > " << fn_log << " << EOF"<<std::endl;
 	// line 1: input image
 	if (do_movie_thon_rings)
 	{