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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 343 149

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 13

Repositories

Showing 10 of 389 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 22 6 287 9 Updated Oct 1, 2024
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Oct 1, 2024
  • deep-neurographs Public

    Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 1, 2024
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 3 BSD-3-Clause 1 43 5 Updated Sep 30, 2024
  • axonal_connectomics Public

    Repository for tools developed for axonal connectomics

    AllenInstitute/axonal_connectomics’s past year of commit activity
    Jupyter Notebook 2 0 3 0 Updated Sep 30, 2024
  • IPNWB Public
    AllenInstitute/IPNWB’s past year of commit activity
    IGOR Pro 1 BSD-3-Clause 0 5 0 Updated Sep 29, 2024
  • AllenInstitute/TEM_config’s past year of commit activity
    0 0 1 0 Updated Sep 28, 2024
  • EM_MC_paper_figures Public

    Notebooks for analyzing and generating figures for EM MC paper

    AllenInstitute/EM_MC_paper_figures’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 27, 2024