Update spikeinterface and docker, add workflow to test with processing dependencies installed #59
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…g dependencies installed We ran into this issue when trying to run kilosort through docker: docker/docker-py#3256 Hopefully updating docker-py to 7.1.0 fixes it: docker/docker-py#3257 (comment)
# for free
to join this conversation on GitHub.
Already have an account?
# to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
We ran into this issue when trying to run kilosort through docker: docker/docker-py#3256
Hopefully updating docker-py to 7.1.0 fixes it: docker/docker-py#3257 (comment)
Spikeinterface also came out with a new version, so update to that: https://spikeinterface.readthedocs.io/en/latest/releases/0.101.0.html
The new workflow installs
bndwith the processing packages included, and runs the same tests.