Bugfix to VCFHeaderLineCount in MultiSourceAnnotator

BimberLab · Oct 26, 2023 · 7bb2070 · 7bb2070
1 parent 278ed24
commit 7bb2070
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/java/com/github/discvrseq/walkers/MultiSourceAnnotator.java b/src/main/java/com/github/discvrseq/walkers/MultiSourceAnnotator.java
@@ -499,7 +499,7 @@ public void onTraversalStart() {
                 }
 
                 if (snpSiftFieldMapping.containsKey(line.getID())) {
-                    line = new VCFInfoHeaderLine(snpSiftFieldMapping.get(line.getID()), line.getCount(), line.getType(), line.getDescription(), line.getSource(), line.getVersion());
+                    line = new VCFInfoHeaderLine(snpSiftFieldMapping.get(line.getID()), line.getCountType(), line.getType(), line.getDescription(), line.getSource(), line.getVersion());
                 }
 
                 header.addMetaDataLine(line);