Fix bug when exporting as AnnData objects (#71)

bump `BiocFrame` package version.
BiocPy · May 16, 2024 · 98d90ff · 98d90ff
1 parent 0da8672
commit 98d90ff
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Showing 2 changed files with 1 addition and 4 deletions.
diff --git a/setup.cfg b/setup.cfg
@@ -50,7 +50,7 @@ python_requires = >=3.8
 install_requires =
     importlib-metadata; python_version<"3.8"
     genomicranges>=0.4.4,<0.5.0
-    biocframe>=0.5.4,<0.6.0
+    biocframe>=0.5.10,<0.6.0
     biocutils>=0.1.4,<0.2.0
 
 [options.packages.find]

diff --git a/src/summarizedexperiment/BaseSE.py b/src/summarizedexperiment/BaseSE.py
@@ -1210,9 +1210,6 @@ def to_anndata(self):
         if self._row_names is not None:
             trows.index = self._row_names
 
-        if trows.empty:
-            trows.index = range(self._shape[0])
-
         tcols = self._cols.to_pandas()
         if self._column_names is not None:
             tcols.index = self._column_names