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sql schema of pyBiocFileCache and r-BiocFileCache are not compatible #11

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khoroshevskyi opened this issue May 22, 2024 · 2 comments
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sql schema of pyBiocFileCache and r-BiocFileCache are not compatible #11

khoroshevskyi opened this issue May 22, 2024 · 2 comments

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@khoroshevskyi
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Hi,
I found one anther issue. Unfortunately, schemas of Python and R packages are not compatible due to different schema.
Python:
image
R:
image

The differences are only VARCHAR/TEXT
Could you please look into this issue?
Thanks!
@khoroshevskyi khoroshevskyi mentioned this issue May 22, 2024
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jkanche added a commit that referenced this issue May 23, 2024
@jkanche @khoroshevskyi
Migrate schema to match Bioconductor's BiocFileCache. (#12)
a91d033 
- Mostly changing some of the fields from varchar to text (#11)
- Update contributor list
- Update Changelog

Co-authored-by: Khoroshevskyi <sasha99250@gmail.com>
@jkanche
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jkanche commented May 23, 2024 •
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Thank you so much for the contribution. Its been a while since I looked at this particular package to check if the schema has been migrated on the R side. Additionally, I added you to the contributors list for the package.

This is merged and let me know if you run into any issues! Thanks again!

@jkanche jkanche closed this as completed May 23, 2024
@jkanche
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jkanche commented May 23, 2024

v0.4.0 of the package contains these changes.

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Fixed schema info to db before initialization of biocfilecache object khoroshevskyi/pyBiocFileCache
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@jkanche @khoroshevskyi