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Issue 275: Prototype VARIMA (Analysis - do not merge) #291

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This draft PR explores the VARIMA baseline model as per #275 and commits an analysis of different VARIMA structures across a few chosen dates with a few chosen ARIMA models aimed at covid and flu NHSN.

This is committed as an analysis here.

Whilst this is not an exhaustive analysis, it shows that the "best" model, as in what time series joint modelling configs have the best out-of-sample CRPS, varies over time and pathogen. This suggests that for multi-signal approaches we probably want to go towards some kind of ensemble over structures to have more consistent forecast performance.

From the pov of a baseline against pyrenew; SARIMA still seems reasonable because it was never the worst time series model.

Linking @seabbs because he was interested in VARIMA.

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codecov bot commented Jan 9, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 15.87%. Comparing base (9c9d86b) to head (44f3dda).
Report is 5 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #291      +/-   ##
==========================================
- Coverage   16.54%   15.87%   -0.67%     
==========================================
  Files          21       21              
  Lines        1481     1537      +56     
==========================================
- Hits          245      244       -1     
- Misses       1236     1293      +57     
Flag Coverage Δ
hewr 47.68% <ø> (-0.11%) ⬇️
pipelines 0.00% <ø> (ø)
pyrenew_hew 1.65% <ø> (-0.24%) ⬇️

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VARIMA baseline model for joint forecasting of NSSP and NHSN signals
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