Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

V1.2.2 Update #82

Merged
merged 3 commits into from
Sep 19, 2024
Merged

V1.2.2 Update #82

merged 3 commits into from
Sep 19, 2024

Conversation

dthoward96
Copy link
Collaborator

V1.2.2 Release of SeqSender

Changes:

GISAID:

  • FLU GISAID submission metadata now correctly parses partial collection dates. If only year is present, it is now correctly stored in "Collection_Year" and if/when month is also present, it is stored in "Collection_Month". If the entire "YYYY-MM-DD" collection date is present, it is stored in the "Collection_Date" field and "Collection_Year"/"Collection_Month" are left empty, otherwise, if the entire collection date is not present, "Collection_Date" is left empty. All fields are added regardless of whether there are only partial/complete dates present.
  • FLU template/validation metadata has additional fields added.
    • Sampling_Strategy
    • Sequencing_Strategy
    • Sequencing_Technology
    • Assembly_Method
    • Coverage
    • Adamantanes_Resistance_pheno
    • Oseltamivir_Resistance_pheno
    • Zanamivir_Resistance_pheno
    • Peramivir_Resistance_pheno
    • Other_Resistance_pheno

@dthoward96 dthoward96 merged commit a08c840 into master Sep 19, 2024
2 checks passed
@dthoward96 dthoward96 deleted the dev branch September 19, 2024 18:48
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant