Conda installation fails on libtiff dependency #636
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@kbowley-asu What OS are you on? |
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I've had the same result on Ubuntu 16.04, Ubuntu 18.04, and Mac 10.13.5 |
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This is starting with a fresh install of Miniconda on each platform. |
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I wonder if this is due to the environment.yml hard pinning, e.g., environment.yml: We also have an open issue (#615) where we have been discussing the hard pinning to dependencies. I think that this is likely what you are encountering. I will give this a test and a build on my Mac and see if that is the issue. If so, we can get a PR in to update the environment.yml after all of the tests have been executed. Thanks for reporting! |
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Hey @jlaura, thanks for all the great work you and the team do! Did you have any luck reproducing and testing this? I experienced the same conda installation failure as @kbowley-asu described above, with conda failing to find I am using Ubuntu 18.04.1 and Anaconda 5.3 (Python 3). |
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Exactly the same issue here on Centos7 and Fedora27. Side note: the lastest version of |
seignovert
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Dec 14, 2018
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@camisatx Last I checked @jlaura was working on this, but he's going to be in and out of the office over the holidays. I am able to re-produce this error. We're planning to push out 3.6.1 sometime next week. I'm going to check the pr from @seignovert and hopefully it can go out with 3.6.1 |
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@camisatx @jessemapel I am in and out. I got a build going with this, but was getting errors from the geos library when I unpinned liftiff. I am in next week to have another go at this. |
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For future reference, fixing the ISIS3 build environment files will only fix problems for people making new build environments. We need to update the ISIS3 conda build recipe in a similar fashion and push up a brand new 3.6.0 build. Only then, will the Anaconda runtime requirements for installing ISIS3 be fixed. |
jessemapel
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Dec 17, 2018
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This has been fixed for the ISIS3 build environment but it's going to take a whole new release. We're planning to fix this for all of our dependencies and then push a new build out. That should happen in a week or two depending on holidays, etc. Watch for 3.6.1 |
This was referenced Dec 17, 2018
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This should now be fixes 🎉 Go ahead and re-try installing now. You'll get version 3.6.1 which is 3.6.0 with a fix for this and a fix for a bug in cubeit. |
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I recommend you clear out your anaconda package cache prior to installing. Run |
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Installed successfully on my Ubuntu 18.04 machine. I appreciate the work and thanks for the early Christmas present! *<:-) |
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@jessemapel Awesome job! I am going to close. @kbowley-asu please reopen if you still have an issue. |
twilson271828
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Feb 7, 2019
…d. (#645) * Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function.
twilson271828
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Feb 7, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation.
twilson271828
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Feb 12, 2019
…plications. (#1565) * Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation.
kledmundson
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Mar 1, 2019
* Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Added option to sort the output for consistent order in testing and added a test case * Cleaned up commented out lines in LidarData.h and .cpp * Added additional documentation for LidarData, LidarControlPoint, and lrolola2isis * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Removed debug lines from LidarData.cpp and old comments from the lrolola2isis twoImage test * Added an additional comment about the Test format to LidarData.cpp * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen.
twilson271828
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Mar 4, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml
twilson271828
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Mar 4, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml
twilson271828
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Mar 5, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml * Deleted some functions that were defined multiple times do to screwed up merge-conflict resolution.
twilson271828
pushed a commit
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Mar 5, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml * Deleted some functions that were defined multiple times do to screwed up merge-conflict resolution. * Fixed some typos which were getting in the way of compilation.
twilson271828
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Mar 5, 2019
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml * Deleted some functions that were defined multiple times do to screwed up merge-conflict resolution. * Fixed some typos which were getting in the way of compilation.
kledmundson
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Mar 6, 2019
…e proj and merge of dev into branch (#3145) * Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Added option to sort the output for consistent order in testing and added a test case * Cleaned up commented out lines in LidarData.h and .cpp * Added additional documentation for LidarData, LidarControlPoint, and lrolola2isis * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Removed debug lines from LidarData.cpp and old comments from the lrolola2isis twoImage test * Added an additional comment about the Test format to LidarData.cpp * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Adds Issue Templates to Issues (#664) * Adds issue templates * Verbage update * Updates issue template for questions (#3131) Removed a newline in the header that I believe was causing the automatic template detection to fail. * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. (#2824) Code reviewed and tested * tgocassisrdrgen exported label re-order. (#3135) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Update label generated by tgocassisrdrgen from additional feedback (#3137) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Add StopTime to tgocassismos's Mosaic PVL group, as it is required for PDS4 export. Also, fix time formatting and east_azimuth units * Remove comment * Changed global variable proj back to projection to avoid build ambiguity errors with the std::proj
kledmundson
pushed a commit
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this issue
Mar 13, 2019
… user interface (#3162) * Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Added option to sort the output for consistent order in testing and added a test case * Cleaned up commented out lines in LidarData.h and .cpp * Added additional documentation for LidarData, LidarControlPoint, and lrolola2isis * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Removed debug lines from LidarData.cpp and old comments from the lrolola2isis twoImage test * Added an additional comment about the Test format to LidarData.cpp * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Adds Issue Templates to Issues (#664) * Adds issue templates * Verbage update * Updates issue template for questions (#3131) Removed a newline in the header that I believe was causing the automatic template detection to fail. * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. (#2824) Code reviewed and tested * tgocassisrdrgen exported label re-order. (#3135) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Update label generated by tgocassisrdrgen from additional feedback (#3137) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Add StopTime to tgocassismos's Mosaic PVL group, as it is required for PDS4 export. Also, fix time formatting and east_azimuth units * Remove comment * Changed global variable proj back to projection to avoid build ambiguity errors with the std::proj * Added option to enter a list of Lidar input files * Removed deprecated code requiring target body radii to convert point coordinate sigmas from distances to angles in lrololo2isis
kledmundson
added a commit
that referenced
this issue
Apr 30, 2019
* Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Adds Issue Templates to Issues (#664) * Adds issue templates * Verbage update * Updates issue template for questions (#3131) Removed a newline in the header that I believe was causing the automatic template detection to fail. * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. (#2824) Code reviewed and tested * tgocassisrdrgen exported label re-order. (#3135) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Update label generated by tgocassisrdrgen from additional feedback (#3137) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Add StopTime to tgocassismos's Mosaic PVL group, as it is required for PDS4 export. Also, fix time formatting and east_azimuth units * Remove comment * Updated truthdata for ProcessExportPds4 class to match updates made for CaSSIS sprint (#3146) * Fix time-formatting in reingested CaSSIS images. (#3149) * Updated truthdata for ProcessExportPds4 class to match updates made for CaSSIS sprint * Fix trailing Z time-format in tgocassis2isis when reingesting images exported from ISIS3 * Added LineEqationTests.cpp (#3152) * History entry added to cube after running sumspice. Fixes #4972. (#658) * Added WriteHistory() method to SumFinder. * Renamed method. * Refactored writeHistory to be up to isis standards. * Added history entries and updated code to be up to isis standards. * Updated history entry. * adding dedicated BundleLidarPointVector class * adding dedicated BundleLidarPointVector class * adding dedicated BundleLidarPointVector class * Various minor mods to the readme (#3165) * Added FileList test (#3168) * Added LineEqationTests.cpp * Added FileListTests.cpp Implemented an istream constructor in FileList.cpp to help with testing. * added FileList tests. implemented istream constructor for FileList.cpp to help with testing. * fixed whitespace issues in FileListTests.cpp * Update FileListTests.cpp * Cleaned up data area wording in install guide (#3170) * temp commits for testing bundle with lidar * temp commits to bundle lidar * Add ISIS3 update instructions to README (#3175) * Merged multisegment DSKs for Bullet * updated with update instructions * isis->isis3 * added header * Updating Contributing.md (#3179) * Merged multisegment DSKs for Bullet * updated with update instructions * isis->isis3 * added header * updated contributing guidelines * removed mentions of TC * Added LatitudeTest using Gtest (#3160) * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. * Created LatitudeTests. * Added C-Shell variable setup (#3173) * Added C-Shell variable setup * Fixed history * Made a bit more pythonic * Updates BulletDSKShape's methods for multisegment DSKs (#3181) * fixed DSK segment methods * fixed some errors * added contraints * fixed bug where an extra segment was added * Fixed memory leak in Bullet shape model (#3180) * Added AffineTests (#3166) * Add Longitude gtest (rebase of #601) (#3182) * Created gtest for Longitude class * Remove old Longitude test * Fix syntax for Longitude Tests * Remove comment * Revert "Remove old Longitude test" This reverts commit 608d3fd. * Cleaned file, organzied test cases * Fixed failing copy constructor test * Fixed bug where findrx was not adding a history blob to the input cube (#3186) * Added writeHistory to findrx. * Rearranged includes in findrx. * Removed extra exceptions writing controlnets (#3185) * Fixed bug where focal plane measured x,y coordinates were not set if the cam->SetImage call failed, References #2591). (#3193) * updates to ControlPoint::ComputeApriori * Fixed bug where focal plane measured x,y coordinates were not set if the cam->SetImage call failed (References #2591). Added check to IsConstrained() method to see if point type is Free, in which case we ignore stored a priori sigmas on the coordinates. * added isis error when GenericTransform::calculateInverse gets empty matrix (#3195) * Writing 0 Value Residuals to PVL (#3194) * Allowed writting of residuals when value is zero to controlnet pvl * Updated ControlNetVersioner unit test * Fixing errors introduced with the changes to ProcessExportPds4.cpp for the tgo sprint. (#3202) * Github/Discuss Documentation Update (#3203) * Updated website documentation to point to github and discuss where appropriate * Updated last install link * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and tru… (#3200) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Update README.md (#3204) Updated to include instructions for release candidate builds on anaconda * Added gtests for Displacement.cpp, removed Displacement unitTest and truthfile. (#3209) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Made tests for Displacement.cpp using gtest. removed Displacement unitTest and truthfile. * Updated README data area instructions (#3214) * Fixed data area instructions in README and some links * Fixed bold in block quote * Fixed legacy install guide link * extra l * Testing indentation list * Testing indentation list again * Testing indentation list code snippet * Minor wording clean up * Removed extra number * Removed duplicate Mars Odyssey entry * Updates to the build recipe for ISIS releases for the 3.7.0 release candidate. (#3205) * Minor modifications for RC build * Small modification to version in the recipe/meta.yaml * Updating release stage in isis/version * Added Area3DTests.cpp (#3216) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Made tests for Displacement.cpp using gtest. removed Displacement unitTest and truthfile. * Added Area3DTests.cpp, removed Area3D truthfile and unit test. * included TestUtilities.h for use with exception testing, added a test for teh Area3D '=' operator * changed formatting to adhere to USGS coding standards * re-addedd the unit test and truth file * gllssi2isis Original Label Fix (#3226) * Allowed writting of residuals when value is zero to controlnet pvl * Updated ControlNetVersioner unit test * Fixed pvl labels original pvl labels not being written to the resulting cube. * Updated docstrings and history for updated methods * Removed the need to set the output cube pixel type * Reverted proceeimport changes * Set the dimensions in the process before processing * Added missing 1 in a history record * Reverted and applied a more appropriate fix * Used outfile obtained at the beginning of the program * Added history comment to app xml * Removed accidental comma (#3230) * Update README.md (#3232) Update readability * Modifying files for conda build for ISIS3.7.0_RC2 (#3229) * Modifying files for conda build for ISIS3.7.0_RC_2 * Changes to modifications until issue #3231 can be completed * Small typo * One final added comment for clarification * Adding tab completion for tcsh on conda activation (#3244) * updates for bundle lidar * updates for bundle lidar * added history comment noting that piecewise polynomial functionality has been disabled to get the lidar stuff working * updates for bundle with lidar
kledmundson
added a commit
that referenced
this issue
Apr 30, 2019
* Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Adds Issue Templates to Issues (#664) * Adds issue templates * Verbage update * Updates issue template for questions (#3131) Removed a newline in the header that I believe was causing the automatic template detection to fail. * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. (#2824) Code reviewed and tested * tgocassisrdrgen exported label re-order. (#3135) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Update label generated by tgocassisrdrgen from additional feedback (#3137) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Add StopTime to tgocassismos's Mosaic PVL group, as it is required for PDS4 export. Also, fix time formatting and east_azimuth units * Remove comment * Updated truthdata for ProcessExportPds4 class to match updates made for CaSSIS sprint (#3146) * Fix time-formatting in reingested CaSSIS images. (#3149) * Updated truthdata for ProcessExportPds4 class to match updates made for CaSSIS sprint * Fix trailing Z time-format in tgocassis2isis when reingesting images exported from ISIS3 * Added LineEqationTests.cpp (#3152) * History entry added to cube after running sumspice. Fixes #4972. (#658) * Added WriteHistory() method to SumFinder. * Renamed method. * Refactored writeHistory to be up to isis standards. * Added history entries and updated code to be up to isis standards. * Updated history entry. * adding dedicated BundleLidarPointVector class * adding dedicated BundleLidarPointVector class * adding dedicated BundleLidarPointVector class * Various minor mods to the readme (#3165) * Added FileList test (#3168) * Added LineEqationTests.cpp * Added FileListTests.cpp Implemented an istream constructor in FileList.cpp to help with testing. * added FileList tests. implemented istream constructor for FileList.cpp to help with testing. * fixed whitespace issues in FileListTests.cpp * Update FileListTests.cpp * Cleaned up data area wording in install guide (#3170) * temp commits for testing bundle with lidar * temp commits to bundle lidar * Add ISIS3 update instructions to README (#3175) * Merged multisegment DSKs for Bullet * updated with update instructions * isis->isis3 * added header * Updating Contributing.md (#3179) * Merged multisegment DSKs for Bullet * updated with update instructions * isis->isis3 * added header * updated contributing guidelines * removed mentions of TC * Added LatitudeTest using Gtest (#3160) * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. * Created LatitudeTests. * Added C-Shell variable setup (#3173) * Added C-Shell variable setup * Fixed history * Made a bit more pythonic * Updates BulletDSKShape's methods for multisegment DSKs (#3181) * fixed DSK segment methods * fixed some errors * added contraints * fixed bug where an extra segment was added * Fixed memory leak in Bullet shape model (#3180) * Added AffineTests (#3166) * Add Longitude gtest (rebase of #601) (#3182) * Created gtest for Longitude class * Remove old Longitude test * Fix syntax for Longitude Tests * Remove comment * Revert "Remove old Longitude test" This reverts commit 608d3fd. * Cleaned file, organzied test cases * Fixed failing copy constructor test * Fixed bug where findrx was not adding a history blob to the input cube (#3186) * Added writeHistory to findrx. * Rearranged includes in findrx. * Removed extra exceptions writing controlnets (#3185) * Fixed bug where focal plane measured x,y coordinates were not set if the cam->SetImage call failed, References #2591). (#3193) * updates to ControlPoint::ComputeApriori * Fixed bug where focal plane measured x,y coordinates were not set if the cam->SetImage call failed (References #2591). Added check to IsConstrained() method to see if point type is Free, in which case we ignore stored a priori sigmas on the coordinates. * added isis error when GenericTransform::calculateInverse gets empty matrix (#3195) * Writing 0 Value Residuals to PVL (#3194) * Allowed writting of residuals when value is zero to controlnet pvl * Updated ControlNetVersioner unit test * Fixing errors introduced with the changes to ProcessExportPds4.cpp for the tgo sprint. (#3202) * Github/Discuss Documentation Update (#3203) * Updated website documentation to point to github and discuss where appropriate * Updated last install link * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and tru… (#3200) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Update README.md (#3204) Updated to include instructions for release candidate builds on anaconda * Added gtests for Displacement.cpp, removed Displacement unitTest and truthfile. (#3209) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Made tests for Displacement.cpp using gtest. removed Displacement unitTest and truthfile. * Updated README data area instructions (#3214) * Fixed data area instructions in README and some links * Fixed bold in block quote * Fixed legacy install guide link * extra l * Testing indentation list * Testing indentation list again * Testing indentation list code snippet * Minor wording clean up * Removed extra number * Removed duplicate Mars Odyssey entry * Updates to the build recipe for ISIS releases for the 3.7.0 release candidate. (#3205) * Minor modifications for RC build * Small modification to version in the recipe/meta.yaml * Updating release stage in isis/version * Added Area3DTests.cpp (#3216) * Added BasisFunctionTests.cpp. Removed BasisFunction unit test and truthfile. * changed expectedOutput values for some of the tests * Made tests for Displacement.cpp using gtest. removed Displacement unitTest and truthfile. * Added Area3DTests.cpp, removed Area3D truthfile and unit test. * included TestUtilities.h for use with exception testing, added a test for teh Area3D '=' operator * changed formatting to adhere to USGS coding standards * re-addedd the unit test and truth file * gllssi2isis Original Label Fix (#3226) * Allowed writting of residuals when value is zero to controlnet pvl * Updated ControlNetVersioner unit test * Fixed pvl labels original pvl labels not being written to the resulting cube. * Updated docstrings and history for updated methods * Removed the need to set the output cube pixel type * Reverted proceeimport changes * Set the dimensions in the process before processing * Added missing 1 in a history record * Reverted and applied a more appropriate fix * Used outfile obtained at the beginning of the program * Added history comment to app xml * Removed accidental comma (#3230) * Update README.md (#3232) Update readability * Modifying files for conda build for ISIS3.7.0_RC2 (#3229) * Modifying files for conda build for ISIS3.7.0_RC_2 * Changes to modifications until issue #3231 can be completed * Small typo * One final added comment for clarification * Adding tab completion for tcsh on conda activation (#3244) * updates for bundle lidar * updates for bundle lidar * added history comment noting that piecewise polynomial functionality has been disabled to get the lidar stuff working * updates for bundle with lidar * removed commented code
dcookastro
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May 21, 2019
…usions added to jigsaw (#3297) * Updated the cmake version to 3.10 * Adding configurations for gtest * Tweaking things for gtest * Got gtest working and made a small example test * Updated the cmake version to be 3.10 or greater * Added test file discovery support and seperated the main into another file * Added more tests for FileName * Updated with the new testing guidelines and added new tests. * Added gmock * PixelTest (#536) * initial Pixel test * Add more test cases for Pixel * testing parameterization in Pixel test * testing function parameterization * parameterize static vs object methods * basic PixelTests implementation * clean up and more static tests * update PixelTests with float/dbl expects * Refactored stats to a functions * Modified to have cubeit remove mosaic pixel tracking info from labels. Fixes #5533 * Update cubeit.xml Fixed a typo * Fixes conda channels in Jenkinsfile & adds a MacOS node (#633) * Merged dev and cleaned up header conflicts * Update for #619. * Fix libtiff dependency (#636) (#644) * Upgrade libtiff to 4.0.10 (#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (#650) * Fixed warning in Pixel unit tests * Removing build numbers from external libraries (#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes #5187 (#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (#663) * Updated .gitmodules to use https rather than ssh (#673) * Added build type release to conda recipe (#676) * Updates README with Discourse (#690) * Updates README with Discourse * Update README.md * Update README.md * Added fix to Spice Server to accept clients with version nums >=3.5.*.* (#780) * Fixed error when trying to export a compressed image using pds2hideal. Fixes #5525. (#2059) * Added capability to export a compressed image with tables missing RECORD_BYTES keyword. Added test for compressed image. * Changed names of test output cubes. * Adding explanatory comments to the meta.yaml file (#2358) * Adding explanatory comments to the recipes/meta.yaml * Replacing accidentally erased line * Added option to sort the output for consistent order in testing and added a test case * Cleaned up commented out lines in LidarData.h and .cpp * Added additional documentation for LidarData, LidarControlPoint, and lrolola2isis * Multisegment DSK support for Bullet engine (#2791) * Merged multisegment DSKs for Bullet * basic tests * removed original tests * Minor updates to download sizes and some text. (#2790) * Removed debug lines from LidarData.cpp and old comments from the lrolola2isis twoImage test * Added an additional comment about the Test format to LidarData.cpp * Phocube will export RA and declination planes even if the point is not on the planet. Fixes #4446 (#657) * Made it so that RA and Dec are added last. * Updated code to be up to standards. * Added RA and dec test. * Updated history comment. * Renamed test. * Fixed typo in documentation * Refactored code so that RA and dec are placed in the correct bands instead of moving them to the last two bands. * Updated documentation, test now checks cube label. * Fixed SummingMode keyword being set in tgocassis2isis (#2847) * Adding Expanded keyword to cassis label and modifying SummingMode keyword * Updating the window count value * Adding capacity to handle imports without Expanded tag * Setting tgocassismos to have tracking turned-on (#2856) * Adding parameter "tracking=true" to tgocassismos call to automos * Adding documentation * Fixing indentation in documentation * Updates to tgocassisrdrgen and ProcessExportPds4 to add content to exported CaSSIS Label. (#2858) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Adds Issue Templates to Issues (#664) * Adds issue templates * Verbage update * Updates issue template for questions (#3131) Removed a newline in the header that I believe was causing the automatic template detection to fail. * Added gtest for ID and split TestUtilities into a cpp and h file to fix duplicate symbol error when building. (#2824) Code reviewed and tested * tgocassisrdrgen exported label re-order. (#3135) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Update label generated by tgocassisrdrgen from additional feedback (#3137) * Add 32-bit ISIS Special Pixel Constants to ProcessExportPds4 * Add ability to set title and version id in exported PDS4 produce in tgocassisrdrgen and ProcessExportPds4 API * Fix bug that occurs when exporting mosaics with Archive groups and fixed min/max lat/lon to east/west bounding box positive east flip bug * Added docs. * Update schema to most recent versions and comment-out schema that isn't used (temporarily) in tgocassisrdrgen. * Added reorder function to ProcessExportPds4 to reorder xml files generated in the wrong order for PDS4 and added cassis-specific schema * Add StopTime to tgocassismos's Mosaic PVL group, as it is required for PDS4 export. Also, fix time formatting and east_azimuth units * Remove comment * Changed global variable proj back to projection to avoid build ambiguity errors with the std::proj * Added option to enter a list of Lidar input files * Removed deprecated code requiring target body radii to convert point coordinate sigmas from distances to angles in lrololo2isis * Updated documentation in SpiceRotation, BundleAdjust, and lrolola2isis * Added multipleInputs test to the lrolola2isis test suite * Added exclusion to jigsaw to prevent running Lidar without solving for spacecraft position * Changed history date to today
acpaquette
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Apr 6, 2021
…d. (DOI-USGS#645) * Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (DOI-USGS#636) (DOI-USGS#644) * Upgrade libtiff to 4.0.10 (DOI-USGS#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (DOI-USGS#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (DOI-USGS#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes DOI-USGS#5187 (DOI-USGS#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (DOI-USGS#663) * Updated .gitmodules to use https rather than ssh (DOI-USGS#673) * Added build type release to conda recipe (DOI-USGS#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function.
acpaquette
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Apr 6, 2021
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (DOI-USGS#636) (DOI-USGS#644) * Upgrade libtiff to 4.0.10 (DOI-USGS#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (DOI-USGS#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (DOI-USGS#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes DOI-USGS#5187 (DOI-USGS#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (DOI-USGS#663) * Updated .gitmodules to use https rather than ssh (DOI-USGS#673) * Added build type release to conda recipe (DOI-USGS#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (DOI-USGS#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation.
acpaquette
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Apr 6, 2021
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (DOI-USGS#636) (DOI-USGS#644) * Upgrade libtiff to 4.0.10 (DOI-USGS#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (DOI-USGS#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (DOI-USGS#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes DOI-USGS#5187 (DOI-USGS#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (DOI-USGS#663) * Updated .gitmodules to use https rather than ssh (DOI-USGS#673) * Added build type release to conda recipe (DOI-USGS#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (DOI-USGS#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml
acpaquette
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Apr 6, 2021
* Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (DOI-USGS#636) (DOI-USGS#644) * Upgrade libtiff to 4.0.10 (DOI-USGS#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (DOI-USGS#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (DOI-USGS#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes DOI-USGS#5187 (DOI-USGS#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (DOI-USGS#663) * Updated .gitmodules to use https rather than ssh (DOI-USGS#673) * Added build type release to conda recipe (DOI-USGS#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (DOI-USGS#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml * Deleted some functions that were defined multiple times do to screwed up merge-conflict resolution.
acpaquette
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Apr 6, 2021
) * Added AlphaCube group to outputlabel in the event the image is cropped. * Fix libtiff dependency (DOI-USGS#636) (DOI-USGS#644) * Upgrade libtiff to 4.0.10 (DOI-USGS#636) * Switch libtiff to 4.0.9 or higher to remove geotiff conflict * Moved ISIS3 conda-build recipe from ISIS3_deps repository (DOI-USGS#650) * Fixed warning in Pixel unit tests * Made a tweak to the dimensions of the alpha cube for cropped images to give it the correct dimensions. * Changed the transform function so it could process an array of doubles instead of an array of ints. * Smear correction was being incorrectly applied to onboard smear corrected images and screwing things up. Fixed it. * Added gtest capability to hyb2onc2isis * Removing build numbers from external libraries (DOI-USGS#660) * Moved ISIS3 conda-build recipe from ISIS3_deps repository * Un-pinned non-astro build numbers * Removing build numbers from external libraries in the environment and meta.yeml files * Final merging * Added pixel type attribute to the output image of program shadow. Fixes DOI-USGS#5187 (DOI-USGS#659) * Removed bolding of some text to decrease distraction. * Fixed some typos. * Reworded documentation. * Added section for Environment and PreferemcesSetup in the Getting Started Section. (DOI-USGS#663) * Updated .gitmodules to use https rather than ssh (DOI-USGS#673) * Added build type release to conda recipe (DOI-USGS#676) * Modified isis/tests/CMakeLists.txt as well as hyb2onc2isis to fix unresolved symbol errors (CMakeLists.txt) and to fix some bugs in hyb2onc2isis involved with turning it into a callable function. * Added w1 test to hyb2onc2isisTests.cpp * Modified hyb2onccal to be a callable function. * Updates README with Discourse (DOI-USGS#690) * Updates README with Discourse * Update README.md * Update README.md * Changed the Pvl label output for Pvl hyb2onc2isis(QString fitsFileName, QString outputCubeFileName, CubeAttributeOutput att, QString target) * Added Newton-Rapheson method to Hyb2OncCalUtils.h to solve the linearity equation. * Final push of hayabusa2 changes made to the ingestion/calibration applications. * Added I/F calibration step. Cleaned up code base and worked on the documentation. The documentation will need to be corrected before this is merged into dev. * Fixed a missing </li> tag in hyb2onccal.xml * Deleted some functions that were defined multiple times do to screwed up merge-conflict resolution. * Fixed some typos which were getting in the way of compilation.
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Attempting to install isis3 with the conda installation instructions results in the following:
It appears that libtiff==4.0.9=0 is not available.
The text was updated successfully, but these errors were encountered: