Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Jump to bottom

Is it possible to call STRs with graphtyper? #147

Open
scienception opened this issue Mar 20, 2024 · 1 comment
Open

Is it possible to call STRs with graphtyper? #147

scienception opened this issue Mar 20, 2024 · 1 comment

Comments

@scienception
Copy link

What would be the arguments/parameters in such case?

Thank you!
@hannespetur
Copy link
Member

Hey,

running graphtyper genotype normally should output STRs among other small variants. If you already have STRs in a VCF that you want to force call, you can do that with the --vcf option.

Best,
Hannes

# for free to join this conversation on GitHub. Already have an account? # to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@hannespetur @scienception