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64 Open 58 Closed
64 Open 58 Closed
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Issues list

Genotype difference between Graphtyper & SURVIVOR
#160 opened Feb 20, 2025 by Sreelekshmi-291
Graphtyper copying the same files multiple times if using "--region_file"
#159 opened Jan 7, 2025 by sroener
question about “--sams=bam.list”
#157 opened Nov 8, 2024 by Henry-Ding
8
graphtyper genotype produces too many files for graphtyper vcf_concatenate to combine
#156 opened Oct 17, 2024 by zachary-foster
1
Not able to handle missing sites
#154 opened Aug 1, 2024 by Hjorvik
1
Genotype_sv Aggregate model has less Output SVs than Input SVs
#152 opened Jul 23, 2024 by ghost
1
HLA-Genotyping: <error> Converting "HLA-A*01:01:01:01" of size 17 to int failed
#151 opened May 20, 2024 by ghost
3
Created chopped CRAI
#150 opened May 17, 2024 by nathanLauHKGI
2
( AC / NUM_MERGED_SVS ) < 25
#149 opened Mar 28, 2024 by weizhu365
1
vcf_merge for SV
#148 opened Mar 25, 2024 by JoannaTan
1
Is it possible to call STRs with graphtyper?
#147 opened Mar 20, 2024 by scienception
1
In the genotype_sv result, the REF filed is N, and the ALT filed is not a sequence.
#146 opened Jan 24, 2024 by tanger-code
2
Graphtyper for calling human X-chromosome variants
#145 opened Jan 17, 2024 by Sirtx
REF in VCF file is N
#144 opened Dec 4, 2023 by pingxinxing
1
Coordinates must be > 0
#143 opened Nov 14, 2023 by carolinapinapaez
1
Genotype outputs all sites
#142 opened Nov 14, 2023 by lihaicheng7003
4
genotype wrong
#141 opened Nov 14, 2023 by lihaicheng7003
4
killed by the cgroup out-of-memory handler
#140 opened Nov 1, 2023 by zhachengwan
1
why SVSIZE=number+
#139 opened Oct 24, 2023 by jingydz
2
Not all Svimmer INS/DEL/DUP are genotyped by grapthyper as expected
#133 opened Aug 18, 2023 by jjfarrell
2
Failing to produce calls for same samples
#132 opened Aug 7, 2023 by buchanri
segment fault when genotyping sv
#131 opened Jul 7, 2023 by dodudoduding
segment fault when genotyping sv
#130 opened Jul 7, 2023 by dodudoduding
Genotyping of variants resulted from multi-sample Mutect2 (question)
#129 opened Jun 4, 2023 by mkyriak
Graphtyper may introduce overlapped SVs in one individual
#128 opened May 18, 2023 by jxcao98
ProTip! Updated in the last three days: updated:>2025-02-23.