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sorry this script was not released along with the publication, it definitely should have been. I am not the author of the script, so I will need to ask a bit around if I or someone else can put it on Github.
Is it possible to share the script creating chopped CRAI for a list of CRAM files?
The method is brief in "SNP and indel calling with GraphTyper" section in Nature volume 607, pages 732–740 (2022) paper.
Thank you!
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